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Series GSE130180 Query DataSets for GSE130180
Status Public on Apr 24, 2019
Title Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Objective: Bone marrow-derived myeloid cells accumulate in the liver as monocytes and macrophages during the progression of obesity-related non-alcoholic fatty liver disease (NAFLD) to steatohepatitis (NASH). Myeloid cells comprise heterogeneous subsets, and dietary overnutrition may affect macrophages in liver and bone marrow. We therefore aimed at characterizing in-depth the functional adaptations of myeloid cells in fatty liver.
Design: We employed single-cell RNA-sequencing to comprehensively assess the heterogeneity of myeloid cells in liver and bone marrow during NAFLD, by analyzing C57BL/6 mice fed with a high-fat, high-sugar, high-cholesterol "Western diet" for 16 weeks. We also characterized NAFLD-driven functional adaptations of macrophages in vitro and their functional relevance during steatohepatitis in vivo.
 
Overall design Liver myeloid leukocytes and their bone marrow precursors adapt a common and functionally relevant inflammatory signature during NAFLD progression.
Bone marrow derived macrophages were cultivated for 7 days followed by 100 ng/ml LPS stimulation. Macrophages were preincubated for the first 4 days with and without 10 mM fatty acid (palmitic and oleic acid 1:3). ND=standard chow diet and WD=Western diet.
 
Contributor(s) Krenkel O, Hundertmark J, Abdallah AT, Kohlhepp M, Puengel T, Roth T, Branco DP, Mossanen JC, Luedde T, Trautwein C, Costa IG, Tacke F
Citation(s) 31076404
Submission date Apr 23, 2019
Last update date Jun 07, 2019
Contact name Oliver Krenkel
Organization name University Hospital Aachen
Street address Pauwels Str. 30
City Aachen
ZIP/Postal code 52074
Country Germany
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (21)
GSM3733467 BMDMs_ND control_replicate_1
GSM3733468 BMDMs_ND control_replicate_2
GSM3733469 BMDMs_ND control_replicate_3
Relations
BioProject PRJNA534228
SRA SRP193451

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE130180_BMDM_FA.txt.gz 5.0 Mb (ftp)(http) TXT
GSE130180_BMDM_WD.txt.gz 4.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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