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Series GSE132804 Query DataSets for GSE132804
Status Public on Dec 31, 2019
Title Dysfunctional epigenetic aging of the normal colon and colorectal cancer risk
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiling of normal colon samples. The Illumina Infinium HumanMethylation450 and EPIC Beadchip arrays were used to obtain DNA methylation profiles across approximately 450,000 and 850,000 CpGs. Samples were from nomal colons of 334 subjects with low, medium or high CRC risk according to their personal adenoma or cancer history.
 
Overall design Bisulphite converted DNA from the 334 samples were hybridised to the Illumina Infinium HumanMethylation450 and EPIC Beadchip arrays
 
Contributor(s) Grady WM, Wang T
Citation(s) 31900199
Submission date Jun 16, 2019
Last update date Jan 14, 2020
Contact name Ting Wang
E-mail(s) wang9ting@gmail.com
Organization name Fred Hutchinson Cancer Research Center
Department Clinical Research
Street address 1100 Fairview Ave. N.
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (2)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
GPL21145 Infinium MethylationEPIC
Samples (334)
GSM3892369 genomic DNA from normal colon sample 1
GSM3892370 genomic DNA from normal colon sample 2
GSM3892371 genomic DNA from normal colon sample 3
Relations
BioProject PRJNA549184

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE132804_RAW.tar 4.2 Gb (http)(custom) TAR (of IDAT)
Processed data included within Sample table
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