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| Status |
Public on Feb 01, 2020 |
| Title |
RNA-seq in putamen of Multiple system atrophy patients |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We performed RNA-seq on total RNA from tissue samples from putamen of the brain from Multiple system atrophy patients.
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| Overall design |
Total RNA was extracted from tissue samples from ten Multiple system atrophy patients. rRNA was depleted before sequencing. Samples were sequenced in duplicates, creating two paired-end experiments per sample.
contributor: Bispebjerg Brain Bank
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| Contributor(s) |
Rydbirk R, Brudek T, Hyde TM, Pakkenberg B, Aznar S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jul 18, 2019 |
| Last update date |
Feb 01, 2020 |
| Contact name |
Rasmus Rydbirk |
| E-mail(s) |
rasmus.rydbirk@regionh.dk
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| Phone |
+4528252902
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| Organization name |
Bispebjerg-Frederiksberg Hospital
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| Department |
Department of Neurology
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| Lab |
Resarch Laboratory for Stereology and Neuroscience
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| Street address |
Nielsine Nielsens Vej 6B, stair 11B, 2nd Floor
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| City |
Copenhagen NW |
| State/province |
Please Select |
| ZIP/Postal code |
2400 |
| Country |
Denmark |
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| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
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| Samples (20)
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| GSM3949276 |
Putamen, MSA2-2 |
| GSM3949277 |
Putamen, MSA3-1 |
| GSM3949278 |
Putamen, MSA3-2 |
| GSM3949279 |
Putamen, MSA4-1 |
| GSM3949280 |
Putamen, MSA4-2 |
| GSM3949281 |
Putamen, MSA5-1 |
| GSM3949282 |
Putamen, MSA5-2 |
| GSM3949283 |
Putamen, MSA6-1 |
| GSM3949284 |
Putamen, MSA6-2 |
| GSM3949285 |
Putamen, MSA7-1 |
| GSM3949286 |
Putamen, MSA7-2 |
| GSM3949287 |
Putamen, MSA8-1 |
| GSM3949288 |
Putamen, MSA8-2 |
| GSM3949289 |
Putamen, MSA9-1 |
| GSM3949290 |
Putamen, MSA9-2 |
| GSM3949291 |
Putamen, MSA10-1 |
| GSM3949292 |
Putamen, MSA10-2 |
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| Relations |
| BioProject |
PRJNA555211 |
| SRA |
SRP215213 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE134472_counts.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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