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| Status |
Public on Aug 14, 2019 |
| Title |
Dissecting roles of PML bodies by genome-wide profiling of PML body-associated regions |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
32353257 |
| Submission date |
Aug 08, 2019 |
| Last update date |
May 05, 2020 |
| Contact name |
Misuzu Kurihara |
| E-mail(s) |
kmisuzu1018@gmail.com, miyanari@nibb.ac.jp
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| Organization name |
National Institute for Basic Biology
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| Street address |
5-1 Higashiyama, Myodaiji
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| City |
Okazaki |
| State/province |
Aichi |
| ZIP/Postal code |
444-8787 |
| Country |
Japan |
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| Platforms (3) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL21493 |
Illumina HiSeq 3000 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (43)
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| GSM4017157 |
ESCs, PmlKO_RNA-seq_rep1 |
| GSM4017158 |
ESCs, PmlKO_RNA-seq_rep2 |
| GSM4017159 |
ESCs, PmlKO_RNA-seq_rep3 |
| GSM4017172 |
ESCs, ALaP_H2O2-_rep1 |
| GSM4017173 |
ESCs, ALaP_H2O2-_rep2 |
| GSM4017174 |
ESCs, ALaP_H2O2+_rep1 |
| GSM4017175 |
ESCs, ALaP_H2O2+_rep2 |
| GSM4017176 |
ESCs, WT_ATAC_rep1 |
| GSM4017177 |
ESCs, WT_ATAC_rep2 |
| GSM4017178 |
ESCs, PmlKO_ATAC_rep1 |
| GSM4017179 |
ESCs, PmlKO_ATAC_rep2 |
| GSM4017180 |
ESCs, WT_ChIP_H3K27ac_rep1 |
| GSM4017181 |
ESCs, WT_ChIP_H3K27ac_rep2 |
| GSM4017182 |
ESCs, PmlKO_ChIP_H3K27ac_rep1 |
| GSM4017183 |
ESCs, PmlKO_ChIP_H3K27ac_rep2 |
| GSM4017184 |
ESCs, WT_ChIP_H3K4me3_rep1 |
| GSM4017185 |
ESCs, WT_ChIP_H3K4me3_rep2 |
| GSM4017186 |
ESCs, PmlKO_ChIP_H3K4me3_rep1 |
| GSM4017187 |
ESCs, PmlKO_ChIP_H3K4me3_rep2 |
| GSM4017188 |
ESCs, WT_ChIP_H3K27me3_rep1 |
| GSM4017189 |
ESCs, WT_ChIP_H3K27me3_rep2 |
| GSM4017190 |
ESCs, PmlKO_ChIP_H3K27me3_rep1 |
| GSM4017191 |
ESCs, PmlKO_ChIP_H3K27me3_rep2 |
| GSM4017192 |
ESCs, WT_ChIP_H3K9me3_rep1 |
| GSM4017193 |
ESCs, WT_ChIP_H3K9me3_rep2 |
| GSM4017194 |
ESCs, PmlKO_ChIP_H3K9me3_rep1 |
| GSM4017195 |
ESCs, PmlKO_ChIP_H3K9me3_rep2 |
| GSM4017196 |
ESCs, WT_input |
| GSM4017197 |
ESCs, PmlKO_input |
| GSM4257619 |
ALaP-PMLwt_para+_H2O2+_rep1 |
| GSM4257620 |
ALaP-PMLwt_para+_H2O2+_rep2 |
| GSM4257621 |
WTpara+_RNA-seq_rep1 |
| GSM4257622 |
WTpara+_RNA-seq_rep2 |
| GSM4257623 |
PmlKOpara+_RNA-seq_rep1 |
| GSM4257624 |
PmlKOpara+_RNA-seq_rep2 |
| GSM4257625 |
APEX-NLS_H2O2+_rep1 |
| GSM4257626 |
APEX-NLS_H2O2+_rep2 |
| GSM4257627 |
APEX-PMLca_H2O2+_rep1 |
| GSM4257628 |
APEX-PMLca_H2O2+_rep2 |
| GSM4257629 |
APEX-PMLca_H2O2- |
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| This SuperSeries is composed of the following SubSeries:
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| GSE135557 |
RNA-seq analyses of wild-type and PML KO mESCs |
| GSE135560 |
Profiling of PML-body associated regions |
| GSE135561 |
ATAC-seq analyses with wild-type and PML KO mESCs |
| GSE135562 |
ChIP-seq analysis of wild-type and PML KO mESCs |
| GSE143361 |
ALaP-seq and RNA-seq analyses of paraquat treated mESCs |
| GSE143362 |
Profiling of APEX-NLS and APEX-PMLca associated regions |
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| Relations |
| BioProject |
PRJNA559285 |
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