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Series GSE135878 Query DataSets for GSE135878
Status Public on Jan 21, 2020
Title MYC and Twist1 cooperate to drive metastasis by eliciting crosstalk between cancer and innate immunity
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Comparative transcriptional profiling of MYC driven HCC and MYC/Twist1 driven HCC during tumor progression, regression and recurrence.
 
Overall design RNA sequencing of MYC-HCC and MYC/Twist1-HCC was performed.
 
Contributor(s) Dhanasekaran R, Felsher D
Citation(s) 31933479
NIH grant(s)
Grant ID Grant title Affiliation Name
K08 CA222676 Functional Proteomic Analysis and Biomarker Identification in a Novel Mouse Model of Metastatic Hepatocellular Carcinoma (HCC) STANFORD UNIVERSITY Renumathy Dhanasekaran
R01 CA208735 (PQ7)Multi-scale Analysis of Tumor Microenvironment Heterogeneity STANFORD UNIVERSITY DEAN W FELSHER
U01 CA188383 Modeling and Predicting Therapeutic Resistance of Cancer STANFORD UNIVERSITY DEAN W FELSHER
Submission date Aug 15, 2019
Last update date Sep 13, 2023
Contact name Renumathy Dhanasekaran
E-mail(s) Dhanaser@stanford.edu
Phone 4044410586
Organization name Stanford University
Street address 300 Pasteur Drive, Alway M211
City Stanford
State/province CA
ZIP/Postal code 94022
Country USA
 
Platforms (1)
GPL23479 BGISEQ-500 (Mus musculus)
Samples (10)
GSM4037020 MYC_HCC_1
GSM4037021 MYC_HCC_2
GSM4037022 MYC_HCC_3
Relations
BioProject PRJNA560393
SRA SRP218453

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE135878_FPKM.xlsx 2.8 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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