|
| Status |
Public on Mar 04, 2020 |
| Title |
Time course regulatory analysis based on paired expression and chromatin accessibility data |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We propose a tool named TimeReg to do Time Course Regulatory Analysis from paired gene expression and chromatin accessibility data.
|
| |
|
| Overall design |
To generate RNA-seq and ATAC-seq data on the retinoic acid-induced mESC differenation at Day 0, Day 2, Day 4, Day 10 and Day 20.
|
| |
|
| Contributor(s) |
Duren Z, Chen X, Wang Y, Wong WH |
| Citation(s) |
32188700 |
| Submission date |
Aug 26, 2019 |
| Last update date |
May 18, 2020 |
| Contact name |
Zhana Duren |
| E-mail(s) |
durenzn@amss.ac.cn
|
| Organization name |
Stanford university
|
| Street address |
318 Campus Drive
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
90304 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
|
| Samples (54)
|
|
| Relations |
| BioProject |
PRJNA562161 |
| SRA |
SRP219274 |
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