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Series GSE136537 Query DataSets for GSE136537
Status Public on Oct 30, 2019
Title Global gene expression profile of CD4+ T cells activated and infected with Tox2- or GFP-only virus under different conditions (RNA-Seq)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary T Follicular helper (Tfh) cell is an effector CD4+ T cell subset specialized in helping B cells in germinal centers (GC) reactions. Although Bcl6 was identified as a Tfh-specific transcription factor essential for their development, the molecular mechanisms underlying Bcl6 regulation and Tfh cell commitment remain unclear. Here, we report that Tox2 transcription factor is highly expressed in Tfh cells, regulated by Bcl6 and STAT3. Forced expression of Tox2 drives Bcl6 expression and Tfh development. Mechanistically, Tox2 directly binds to Tfh-associated genes, including Bcl6, and functions to promote their chromatin accessibility and modulate the activities of other Tfh-regulating factors. Conversely, genetic deletion of Tox2 results in defective Tfh differentiation, and inhibiting both Tox and Tox2 in T cells abolishes Tfh differentiation and GC response. Thus, our results demonstrate that Tox2 is a key transcription factor that regulates Bcl6 expression and Tfh development and suggest a Tox2-Bcl6 axis in feed-forward regulation of Tfh program.
 
Overall design To gain insights into the mechanism whereby Tox2 regulates Tfh differentiation, we performed RNA-seq analysis on Tox2-overexpressing (Tox2-RV-GFP+) and control (Empty-RV-GFP+) CD4+ T cells cultured in both Th0 (αIFNγ+αIL-4+αIL-2) and Tfh-like (αIFNγ+αIL-4+αIL-2+IL-6) conditions.
 
Contributor(s) Xu W, Zhao X
Citation(s) 31732165
Submission date Aug 28, 2019
Last update date Dec 04, 2019
Contact name Chen Dong
Organization name Tsinghua University
Department Institute for Immunology and School of Medicine
Lab Dongchen's lab
Street address Haidian District
City Beijing
ZIP/Postal code 100084
Country China
 
Platforms (1)
GPL23479 BGISEQ-500 (Mus musculus)
Samples (4)
GSM4051205 CD4+ T cells: Th0 (GFP) - RNAseq
GSM4051206 CD4+ T cells: Tfh-like (GFP) - RNAseq
GSM4051207 CD4+ T cells: Tfh-like (Tox2) - RNAseq
Relations
BioProject PRJNA562634
SRA SRP219585

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136537_RAW.tar 490.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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