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| Status |
Public on Mar 23, 2021 |
| Title |
Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications |
| Organisms |
Branchiostoma lanceolatum; Danio rerio; Mus musculus |
| Experiment type |
Other
|
| Summary |
4C-seq experiments to study the evolution of the chromatin architecture of ancient gene regulatory blocks at the origin of vertebrates.
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| Overall design |
4C-seq experiments centered at the promoters of the trans-dev genes involved in gene regulatory blocks in amphioxus plus their paralog genes in mouse and zebrafish.
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| |
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| Contributor(s) |
Touceda-Suárez M, Kita EM, Acemel RD, Firbas PN, Magri MS, Naranjo S, Tena JJ, Gómez-Skarmeta JL, Maeso I, Irimia M |
| Citation(s) |
32421818 |
| Submission date |
Aug 28, 2019 |
| Last update date |
Mar 25, 2021 |
| Contact name |
Rafael Domínguez Acemel |
| E-mail(s) |
rdacemel@gmail.com
|
| Organization name |
Max Delbrück Center for Molecular Medicine (MDC)
|
| Department |
Berlin Institute of Medical Systems Biology (BIMSB)
|
| Lab |
AG Lupiañez
|
| Street address |
Hannoversche Str. 28
|
| City |
Berlin |
| State/province |
Berlin |
| ZIP/Postal code |
10115 |
| Country |
Germany |
| |
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| Platforms (3) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
| GPL20177 |
Illumina HiSeq 2000 (Branchiostoma lanceolatum) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA562684 |
| SRA |
SRP219916 |
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