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Series GSE138348 Query DataSets for GSE138348
Status Public on Jan 14, 2020
Title Effects of Electronic Cigarette Constituents on the Human Lung: A Pilot Clinical Trial [methylation]
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary E-cig use is continuing to increase, particularly among youth never-smokers, and is used by some smokers to quit. The acute and chronic toxicity of e-cig use is unclear generally in the context of increasing reports of inflammatory-type pneumonia in some e-cig users. To assess lung effects of e-cigs without nicotine or flavors, we conducted a pilot study with serial bronchoscopies over 4 weeks in 30 never-smokers, randomized either to a four-week intervention with the use of e-cigs containing only 50% propylene glycol (PG) and 50% vegetable glycerine (VG) or to a no-use control group. Compliance to the e-cig intervention was assessed by participants sending daily puff counts and by urinary propylene glycol (PG). Inflammatory cell counts and cytokines were determined in bronchoalveolar lavage (BAL) fluids. Genome-wide expression, microRNA, and mRNA were determined from bronchial epithelial cells. There were no significant differences in changes of BAL inflammatory cell counts or cytokines between baseline and follow-up, comparing the control and e-cig groups. However, in the intervention but not the control group, change in urinary PG as a marker of e-cig use and inhalation, was significantly correlated with change in cell counts (cell concentrations, macrophages, and lymphocytes) and cytokines (IL-8, IL-13, and TNF-α), although the absolute magnitude of changes was small. There were no significant changes in mRNA or microRNA gene expression. Although limited by study size and duration, this is the first experimental demonstration of an impact of e-cig use on inflammation in the human lung among never-smokers.
 
Overall design Bisulphite converted DNA from the 58 samples were hybridised to the Illumina Infinium 850k Human Methylation Beadchips
 
Contributor(s) Song M, Weng DY, Shields PG
Citation(s) 31619441
Submission date Oct 02, 2019
Last update date Jan 14, 2020
Contact name Daniel Yui Weng
E-mail(s) daniel.weng@osumc.edu
Phone 614-3664068
Organization name The Ohio State University
Department Comprehensive Cancer Center
Street address 420 W. 12th Ave. Room 390
City Columbus
State/province OH
ZIP/Postal code 43210
Country USA
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (58)
GSM4105846 202225190140_R02C01
GSM4105847 202225190140_R03C01
GSM4105848 202232360102_R08C01
This SubSeries is part of SuperSeries:
GSE138351 Effects of Electronic Cigarette Constituents on the Human Lung: A Pilot Clinical Trial
Relations
BioProject PRJNA575552

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138348_Matrix_signal.xlsx 1018.0 Mb (ftp)(http) XLSX
GSE138348_RAW.tar 966.6 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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