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| Status |
Public on Mar 04, 2020 |
| Title |
Impact of splicing factors (ESRP1 and KHDRBS3) on prostate cancer biology |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Dysregulation of mRNA alternative splicing (AS) has been implicated in development and progression of hematological malignancies. How the global AS dysregulation contributes to the development and progression of solid tumors remains generally unclear. Recently, we show that many splicing factors (such as ESRP1 and KHDRBS3) are overexpressed in human primary prostate cancer (PCa) versus normal tissues. To further determine the biological impact of splicing factors on PCa aggressiveness, we treated AR- PC3 cells with siRNAs against either ESRP1 or KHDRBS3 and both. RNA-seq analysis was done in triplicates of rRNA-depleted total RNAs isolated from PC3 cells 48-72hr after siRNA infection. rMATS and DEseq2 were used to reveal the effect of knocking down ESRP1 and/or KHDRBS3 individually or in combination on mRNA splicing landscape and gene expression change.
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| |
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| Overall design |
Quantification of changes in RNA splicing and gene expression in prostate cancer cells treated with siRNAs to knockdown either ESRP1 or KHDRBS3 individually and in combination.
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| |
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| Contributor(s) |
Zhang D, Hu Q, Tang DG |
| Citation(s) |
32350277 |
| Submission date |
Nov 05, 2019 |
| Last update date |
May 12, 2020 |
| Contact name |
Dingxiao Zhang |
| E-mail(s) |
zdx1980@hnu.edu.cn
|
| Phone |
+86-15391542415
|
| Organization name |
Hunan University
|
| Department |
School of BioMedical Sciences
|
| Lab |
Zhang lab
|
| Street address |
Yuelushan
|
| City |
Changsha |
| State/province |
Hunan |
| ZIP/Postal code |
410082 |
| Country |
China |
| |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (12)
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| Relations |
| BioProject |
PRJNA587741 |
| SRA |
SRP228608 |
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