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Series GSE141039 Query DataSets for GSE141039
Status Public on Jan 31, 2020
Title DNA methylation data from 153 ATRT tumor samples
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Clinical and molecular risk factors were analyzed in a large cohort of patients with Atypical Teratoid Rhabdoid Tumors (ATRT) recruited to the European Rhabdoid Regsitry (EU-RHAB) and data were validated in a second independent cohort of ATRT patients.
 
Overall design 153 ATRT samples were selected for DNA extraction and hybridization on Illumina DNA methylation arrays to determine their molecular subtype.
 
Contributor(s) Frühwald M, Hasselblatt M, Kool M
Citation(s) 31883020
Submission date Nov 26, 2019
Last update date Feb 27, 2020
Contact name Martin Sill
E-mail(s) m.sill@dkfz.de
Organization name DKFZ
Department Division of Pediatric Neurooncology
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platforms (2)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
GPL21145 Infinium MethylationEPIC
Samples (153)
GSM4192844 ATRT_EURHAB_01
GSM4192845 ATRT_EURHAB_02
GSM4192846 ATRT_EURHAB_03
Relations
BioProject PRJNA591854

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141039_GPL13534_matrix_processed.txt.gz 137.5 Mb (ftp)(http) TXT
GSE141039_GPL21145_matrix_processed.txt.gz 112.7 Mb (ftp)(http) TXT
GSE141039_RAW.tar 1.8 Gb (http)(custom) TAR (of IDAT)
Processed data are available on Series record

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