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Series GSE14106 Query DataSets for GSE14106
Status Public on Nov 19, 2009
Title Transcriptome data from inflorescence stalks of intact A. thaliana plants after infection with A. tumefaciens
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary The intention of these gene expression analysis was to study host responses to an infection with Agrobacterium tumefaciens at different stages of crown gall development. Therefore the transcriptome of infected inflorescence stalk tissue and mature crown galls of Arabidopsis thaliana (WS-2) was determined of three different time points. These were compared with the transcriptome of mock-infected inflorescence stalk tissue (reference) of the same age. The following time points were analyzed: (i) three hours post inoculation, before the T-DNA is integrated into the host genome (ii) six days after inoculation when the T-DNA is present in the nucleus and the oncogenes are expressed in the host cell, and (iii) 35 days after inoculation when a mature tumors has developed. For the three-hour- (3hpi) and six-day- time point (6dpi) plants were infected with the virulent strain C58, harboring a T-DNA, or with strain GV3101, containing a disarmed Ti-plasmid. This allows discrimination between signals which derive from the bacterial pathogen and the T-DNA encoded oncogenes.

This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 17172353, 17827272, 19794116
Submission date Dec 23, 2008
Last update date Aug 15, 2018
Contact name Rosalia Deeken
E-mail(s) deeken@botanik.uni-wuerzburg.de
Phone +49 931 8886121
Fax +49 931 8886158
Organization name University of Wuerzburg, Julius-von-Sachs-Institute
Department Botany I; Plant Molecular Physiology & Biophysics
Lab Prof. Hedrich
Street address Julius-von-Sachs-Platz 2
City Wuerzburg
ZIP/Postal code 97072
Country Germany
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (32)
GSM350799 Reference 35dpi 1
GSM350800 Reference 35dpi 2
GSM350801 Reference 35dpi 3
This SuperSeries is composed of the following SubSeries:
GSE13927 Transcriptome of mature Arabidopsis thaliana crown galls
GSE13929 Arabidopsis thaliana three hours after infection with Agrobacterium tumefaciens
GSE13930 Arabidopsis thaliana six days after infection with Agrobacterium tumefaciens
Relations
Affiliated with GSE69995
BioProject PRJNA111195

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE14106_RAW.tar 85.8 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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