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Series GSE141066 Query DataSets for GSE141066
Status Public on Nov 27, 2019
Title Sex differences in behavioral and brainstem transcriptomic neuroadaptations following neonatal opioid exposure in outbred mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The Opioid Use Disorder epidemic led to an increase in cases of Nenonatal Opioid Withdrawal Syndrome (NOWS) in infants born to opioid-dependent mothers. Hallmark features include weight loss, irritability, inconsolability, insomnia, and increased pain sensitivity. The neurobiological basis of NOWS is largely unknown. Improved mouse models will facilitate mechanistic and treatment discovery. We treated neonatal outbred Cartworth Farms White (CFW) mice (Swiss Webster) with morphine sulfate (15 mg/kg, s.c.) twice daily on postnatal day (P)1 through P14, the approximate third trimester-equivalent of human gestation. Weight loss was monitored and behavioral symptoms were measured on P7 and P14 at 16 h post-morphine. Brainstem containing pons and medulla was collected on P14 and processed for transcriptome analysis via mRNA sequencing (RNA-seq). Morphine induced weight loss from P2 to P14 that remained at P21 and P50. Repeated morphine also induced a delayed self-righting latency at P4 and a persistent, female-specific delay at P14. Morphine-treated females also showed an earlier increase in ultrasonic vocalizations (USVs) on P7. Both morphine-treated sexes showed a large increase in USVs on P14. Furthermore, thermal nociception via hot plate and tail withdrawal assays indicated that mice exhibited thermal hyperalgesia on P7 and P14, with females showing greater hyperalgesia (tail withdrawal) on P7. Morphine-treated mice also exhibited anxiety-like behavior at P21 (open field). Finally, brainstem transcriptome analysis identified a canonical gene set relevant to opioid signaling in males and a distinct gene set in females that was enriched for ribosomal proteins, mitochondrial function and neurodegenerative disorders. Sex-specific transcriptomic neuroadaptations implicate sex-specific treatments.
 
Overall design RNA isolation and RNA-seq. RNA was isolated using previously described methods involving Trizol (Qiagen), ethanol precipitation, filtering columns for clean-up (Qiagen), and elution with sterile, double deionized water(Yazdani et al. 2015). Samples were diluted to 50 ng/ul. RNA library preparation (poly-A selection) and RNA-seq was conducted at the University of Chicago Genomics Facility on an Illumina NovaSEQ6000 using a NovaSEQ SP-100 bp flowcell/reagent cassette. The 12 multiplexed, pooled samples [from six saline (SAL)-treated and six morphine (MOR)-treated mice] were sequenced (100 bp single-end) on a single lane of the two-lane flowcell. Reads were trimmed for quality using Trimmomatic (Bolger et al. 2014). Trimmed reads were then aligned to the mm10 mouse reference genome (Ensembl) to generate BAM files for alignment using STAR (Dobin et al. 2013). The featureCounts read summarization program was used to count reads mapping to the “exon” feature in a GTF file obtained from Ensembl. Differential gene expression analysis of normalized read counts from Rsubread (Liao et al. 2019) was performed in R using edgeR (Robinson et al. 2010). In the sex-combined analysis, we included both “Sex” and “Dam” as covariates account for variance between sexes and across families. In the female-only and male-only analyses, we included “Dam” as a covariate to account for variance across families.
Web link https://pubmed.ncbi.nlm.nih.gov/34479978/
 
Contributor(s) Bryant C, Borrelli K, Ruan Q
Citation(s) 34479978
Submission date Nov 26, 2019
Last update date Sep 17, 2021
Contact name Camron D Bryant
E-mail(s) camron@bu.edu
Phone 6173589577
Organization name Boston University School of Medicine
Department Pharmacology
Lab Laboratory of Addiction Genetics
Street address 72 East Concord St
City Boston
State/province MA
ZIP/Postal code 02118
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM4194437 Saline rep1
GSM4194438 Saline rep2
GSM4194439 Saline rep3
Relations
BioProject PRJNA591918
SRA SRP233366

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141066_NOWScounts.txt.gz 775.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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