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Series GSE142394 Query DataSets for GSE142394
Status Public on Dec 31, 2020
Title Cell competition as a barrier for interspecies chimerism between evolutionary distant species
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary we develop an interspecies pluripotent stem cell (PSC) co-culture strategy and uncover a previously unknown mode of cell competition. Interspecies PSC competition occurs during primed but not naive pluripotency, and between evolutionarily distant species. We identified genes related to NF-κB signaling pathways, among others, were upregulated in loser cells and genetic inactivation of RELA, a core component of canonical NF-κB pathway, could overcome interspecies PSC competition. We further showed that an upstream regulator of the NF-κB signaling, MYD88 innate immune signal transduction adaptor, was also involved in promoting loser PSC elimination. Suppressing interspecies PSC competition via genetic perturbation of MYD88 or P65 improved engraftment of human cells in early post-implantation mouse embryos. Our study discovers a new paradigm of cell competition and paves the way for studying evolutionarily conserved cell competition mechanisms during early mammalian development. Strategies developed here to overcome interspecies PSC competition may facilitate interspecies organogenesis between evolutionary distant species, including humans. 
 
Overall design Examination of 2 different mRNA expression level of human ESC cells in co-culture and separate culture condition
 
Contributor(s) Zheng C, Hu Y
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Submission date Dec 19, 2019
Last update date Dec 31, 2020
Contact name CNSA CNGB
Organization name BGI
Street address BGI
City shenzhen
ZIP/Postal code 518083
Country China
 
Platforms (1)
GPL23227 BGISEQ-500 (Homo sapiens)
Samples (8)
GSM4226887 D1-Co-h-2
GSM4226888 D1-Co-h-3
GSM4226889 D2-Co-h-1
Relations
BioProject PRJNA596805
SRA SRP238338

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Supplementary file Size Download File type/resource
GSE142394_TranscriptsFPKM.xlsx 3.4 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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