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Series GSE143150 Query DataSets for GSE143150
Status Public on Jan 08, 2020
Title The histone demethylase JMJD2B regulates endothelial-to-mesenchymal transition [microarray]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Endothelial cells play an important role in maintenance of the vascular system and the repair after injury. Under pro-inflammatory conditions, endothelial cells can acquire a mesenchymal phenotype by a process named endothelial-to-mesenchymal transition (EndMT), which affects the functional properties of endothelial cells. Here, we investigated the epigenetic control of EndMT. We show that the histone demethylase JMJD2B is induced by EndMT promoting pro-inflammatory and hypoxic conditions. Silencing of JMJD2B reduced TGF-β2-induced expression of mesenchymal genes and prevented the alterations in endothelial morphology and impaired endothelial barrier function. Endothelial-specific deletion of JMJD2B in vivo confirmed a reduction of EndMT after myocardial infarction. EndMT did not affect global H3K9me3 levels but induced a site-specific reduction of repressive H3K9me3 marks at promoters of mesenchymal genes, such as Calponin (CNN1), and genes involved in TGF-β signaling, such as AKT Serine/Threonine Kinase 3 (AKT3) and sulfatase 1 (SULF1). Silencing of JMJD2B prevented the EndMT-induced reduction of H3K9me3 marks at these promotors and further repressed these EndMT-related genes. Our study reveals that endothelial identity and function is critically controlled by the histone demethylase JMJD2B, which is induced by EndMT-promoting pro-inflammatory and hypoxic conditions and support the acquirement of a mesenchymal phenotype.
 
Overall design Affymetrix Human Exon 1.0 ST Array of HUVEC cells in full- and differentiation medium under control and JMJD2B knockdown.
 
Contributor(s) Glaser SF, Dimmeler S
Citation(s) 32034099
Submission date Jan 06, 2020
Last update date Apr 08, 2020
Contact name David John
E-mail(s) john@med.uni-frankfurt.de
Organization name Institute for Cardiovascular Regeneration
Street address Theodor-Stern-Kai 7
City Frankfurt
State/province Hessen
ZIP/Postal code 60590
Country Germany
 
Platforms (1)
GPL5175 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]
Samples (12)
GSM4250986 HUVEC DM control, rep 1
GSM4250987 HUVEC DM siJMJD2B, rep1
GSM4250988 HUVEC FM control, rep 1
This SubSeries is part of SuperSeries:
GSE143151 The histone demethylase JMJD2B regulates endothelial-to-mesenchymal transition
Relations
BioProject PRJNA599505

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE143150_RAW.tar 261.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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