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| Status |
Public on Jan 12, 2010 |
| Title |
Expression data from Col-0 and pil5 imbibed seeds after far-red or far-red/red light irradiation. |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
PIL5 is a key negative regulator of phytochrome mediated seed germination and PIL5 protein is degraded by red light irradiation through phytochrome. The microarray aimed to find various red light-regulated genes and PIL5-regulated genes in the imbibed seeds.
Keywords: genetic modification
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| Overall design |
Col-0 and pil5 seeds were irradiated by far-red light or far-red/red light and then, incubated in the dark for 12 hours. Total three biological replicates were used for the microarray.
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| Contributor(s) |
Choi G |
| Citation(s) |
19244139 |
| Submission date |
Jan 12, 2009 |
| Last update date |
Aug 15, 2018 |
| Contact name |
Giltsu Choi |
| E-mail(s) |
gchoi@kaist.edu
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| Phone |
82423502636
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| Fax |
82423502610
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| Organization name |
KAIST
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| Department |
Biological Sciences
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| Lab |
Choi Laboratory
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| Street address |
335 Gwahangno
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| City |
Daejeon |
| ZIP/Postal code |
305-701 |
| Country |
South Korea |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (12)
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| GSM359419 |
pil5, red light, biological rep1 |
| GSM359420 |
Col-0, dark, biological rep2 |
| GSM359421 |
Col-0, red light, biological rep2 |
| GSM359422 |
pil5, dark, biological rep2 |
| GSM359423 |
pil5, red light, biological rep2 |
| GSM359424 |
Col-0, dark, biological rep3 |
| GSM359425 |
Col-0, red light, biological rep3 |
| GSM359426 |
pil5, dark, biological rep3 |
| GSM359427 |
pil5, red light, biological rep3 |
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| Relations |
| Affiliated with |
GSE69995 |
| BioProject |
PRJNA111417 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE14374_RAW.tar |
26.4 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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