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Series GSE144228 Query DataSets for GSE144228
Status Public on Apr 10, 2021
Title The glucocorticoid receptor coordinates myofiber-selective transcriptional networks
Organism Mus musculus
Experiment type Expression profiling by array
Summary Muscle fibers have the capacity to modulate their size in response to hormones, including glucocorticoids. Their effects are mediated by the ubiquitously expressed glucocorticoid receptor (GR). However, GR-mediated transcriptional regulation in skeletal muscle at physiological glucocorticoid levels remains elusive. Our study reveals an increased expression of numerous anabolic factors in GR-deficient myofibers, and a reduced expression of antianabolic factors, leading to fiber hypertrophy. Genome-wide analyses demonstrate that myofiber GR controls broad gene networks by binding to glucocorticoid response elements (GREs) at enhancers. Moreover, we provide topological and molecular insights into the chromatin landscape of GR-controlled genes in myofibers. We demonstrate that cooperative binding of GR with the transcription factors Myod1 and Foxf2 in enhancer regions, in collaboration with Nrf1 at promoters, plays a key role in the negative regulation of muscle mass. Thus, these results open new perspectives to counteract muscle weakness in various diseases.
Overall design Gene expression profiling was performed on total RNA isolated from control and GR(i)skm-/- gastrocnemius muscles
Contributor(s) Jelinsky S, Metzger D
Citation(s) 33836079
Submission date Jan 24, 2020
Last update date Apr 10, 2021
Contact name Scott Jelinsky
Phone 617-674-7272
Organization name Pfizer
Department Inflammation and Immunology
Lab Computational Precision Medicine
Street address 610 Main Street
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (8)
GSM4283821 WT_Gastroc_1
GSM4283822 WT_Gastroc_2
GSM4283823 WT_Gastroc_3
BioProject PRJNA603085

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144228_RAW.tar 46.0 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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