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Series GSE144397 Query DataSets for GSE144397
Status Public on Jan 28, 2020
Title AP-1 imprints a reversible transcriptional programme of senescent cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Senescent cells affect many physiological and pathophysiological processes. While select genetic and epigenetic elements for senescence induction have been identified, the dynamics, epigenetic mechanisms and regulatory networks defining senescence competence, induction and maintenance remain poorly understood, precluding the deliberate therapeutic targeting of senescence for health benefits. Here, we examined the possibility that the epigenetic state of enhancers determines senescent cell fate. We explored this by generating time-resolved transcriptomes and epigenome profiles during oncogenic RAS-induced senescence and validating central findings in different cell biology and disease models of senescence. Through integrative analysis and functional validation, we reveal links between enhancer chromatin, transcription factor recruitment and senescence competence. We demonstrate that activator protein 1 (AP-1) ‘pioneers’ the senescence enhancer landscape and defines the organizational principles of the transcription factor network that drives the transcriptional programme of senescent cells. Together, our findings enabled us to manipulate the senescence phenotype with potential therapeutic implications.

 
Overall design Refer to individual Series
 
Citation(s) 32514071, 36938415
Submission date Jan 28, 2020
Last update date Jul 14, 2023
Contact name Oliver Bischof
E-mail(s) oliver.bischof@pasteur.fr
Organization name Institut Pasteur
Department Cell Biology & Infection
Lab Nuclear Organization & Oncogenesis - Inserm U993
Street address 28 rue du Docteur Roux
City Paris Cedex 15
ZIP/Postal code 75724
Country France
 
Platforms (1)
GPL17586 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
Samples (96)
GSM3057176 WI38_QUIESCENCE_REP1_T0
GSM3057177 WI38_QUIESCENCE_REP1_12H
GSM3057178 WI38_QUIESCENCE_REP1_24H
This SuperSeries is composed of the following SubSeries:
GSE112084 AP-1 Imprints a Reversible Transcriptional Programme of Senescent Cells
GSE122918 AP-1 Imprints a Reversible Transcriptional Programme of Senescent Cells
GSE143248 AP-1 Imprints a Reversible Transcriptional Programme of Senescent Cells
Relations
BioProject PRJNA603551

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144397_RAW.tar 2.3 Gb (http)(custom) TAR (of CEL)

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