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Status
Public on May 31, 2006
Title
Gene expression of breast cancer tissue in a large population-based cohort of Swedish patients
Organism
Homo sapiens Experiment type
Expression profiling by array
Summary
Tissue material was collected from all breast cancer patients receiving surgery at Karolinska Hospital from 1994-1996. Material was frozen immediatley on dry ice or in liquid nitrogen and stored in -70°C freezers. This series contains expression data for n=159 tumors from which RNA could be collected in sufficient amounts and quality for analysis.
Overall design
All tumor specimens were assessed on U133 A and B arrays.
Web link
http://www.meb.ki.se/~yudpaw/
Contributor(s)
Pawitan Y , Bjohle J , Amler L , Borg A , Egyhazi S , Hall P , Han X , Holmberg L , Huang F , Klaar S , Liu ET , Miller LD , Nordgren H , Ploner A , Sandelin K , Shaw PM , Smeds J , Skoog L , Wedren S , Bergh J Citation(s)
16280042 , 16813654 Submission date
Jun 04, 2004
Last update date
Sep 26, 2019
Contact name
Alexander Ploner
E-mail(s)
Alexander.Ploner@meb.ki.se Phone
++46-8-524-82329
Fax
++46-8-31 11 01
Organization name
Karolinska Institutet
Department
Medical Epidemiology and Biostatistics
Street address
City
Stockholm
ZIP/Postal code
SE-171 77
Country
Sweden
Platforms (2)
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
GPL97 [HG-U133B] Affymetrix Human Genome U133B Array
Samples (318)
Relations BioProject
PRJNA90007
Clinical Data, table version 2, updated on June 12, 2009 header descriptions ID_REF sample reference
RELAPSE breast cancer relapse (1 = relapse, 0 = no relapse or censored)
SURV_RELAPSE time until relapse or censoring (in years)
DEATH death from any reason (1 = dead, 0 = alive or censored)
DEATH_BC death due to breast cancer (1 = dead from breast cancer, 0 = alive or censored)
SURV_DEATH time until death or censoring (in years)
SUBTYPE tumor subclasses as decribed in PMID 11553815 (No Subtype = sample could not be classified)
ELSTON Elston tumor grade (1-3)
Data table ID_REF RELAPSE SURV_RELAPSE DEATH DEATH_BC SURV_DEATH SUBTYPE ELSTON X027JO
1
3.82
1
1
4.14
No Subtype
2
X350JO
0
8.15
0
0
8.15
Luminal B
3
X028JA
0
2.22
1
0
2.22
Luminal A
1
X126AS
0
8.23
0
0
8.23
No Subtype
2
X005JO
0
5.55
1
0
5.55
Luminal A
NA
X045OL
0
8.3
0
0
8.3
Luminal B
3
X041LA
0
4.42
1
0
4.42
Luminal A
2
X229LA
0
8.07
0
0
8.07
No Subtype
1
X347JA
0
6.38
0
0
6.38
Basal
3
X122FO
0
8.13
0
0
8.13
ERBB2
3
X054BO
1
4.08
1
1
5.51
Basal
NA
X204FA
0
8.11
0
0
8.11
No Subtype
2
X356AL
1
3.47
1
1
5.47
Luminal B
3
X089HO
1
0.56
0
0
6.82
Luminal B
3
X215HE
1
5.53
1
1
6.25
Normal Like
2
X223LI
0
7.71
0
0
7.71
No Subtype
2
X055SV
1
4.44
1
1
6.22
Luminal A
2
X380MO
1
1.39
1
1
3.06
Basal
3
X111MA
0
5.87
1
0
5.87
Basal
3
X264LA
0
7.86
0
0
7.86
Luminal A
2
159 5 Kbytes .Supplementary file Size Download File type/resource GSE1456_RAW.tar
1.0 Gb
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