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Series GSE145713 Query DataSets for GSE145713
Status Public on Jul 29, 2020
Title Robust intrathymic development of regulatory T cells in young NOD mice is rapidly restrained by recirculating cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Regulatory T lymphocytes (Treg) play a vital role in the protection of the organism against autoimmune pathology. It is therefore paradoxical that comparatively large numbers of Treg were found in the thymus of type I diabetes‐prone NOD mice. The Treg population in the thymus is composed of newly developing cells and cells that had recirculated from the periphery back to the thymus. We here demonstrate that exceptionally large numbers of Treg develop in the thymus of young, but not adult, NOD mice. Once emigrated from the thymus, an unusually large proportion of these Treg is activated in the periphery, which causes a particularly abundant accumulation of recirculating Treg in the thymus. These cells then rapidly inhibit de novo development of Treg. The proportions of developing Treg thus reach levels similar to or lower than those found in most other, type 1 diabetes‐resistant, inbred mouse strains. Thus, in adult NOD mice the particularly large Treg‐niche is actually composed of mostly recirculating cells and only few newly developing Treg.
 
Overall design Here we show the gene expression by RNAseq from regulatory T cells recirculating to the thymus, in NOD and B6, 3 weeks old mouse strains.
 
Contributor(s) Darrigues J, Santamaria JC, Galindo-Albarrán AO, Robey EA, Joffre OP, van Meerwijk JM, Romagnoli P
Citation(s) 32730634
Submission date Feb 21, 2020
Last update date Oct 28, 2020
Contact name Joost van Meerwijk
E-mail(s) Joost.van-Meerwijk@inserm.fr
Phone 0562748381
Organization name INSERM
Department U1043
Lab Joost van Meerwijk Eq1
Street address CHU Purpan – BP 3028
City Toulouse
State/province HG
ZIP/Postal code 31024
Country France
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (6)
GSM4331460 B6_GFPnegative_3weeks_Replicate_1
GSM4331461 B6_GFPnegative_3weeks_Replicate_2
GSM4331462 B6_GFPnegative_3weeks_Replicate_3
Relations
BioProject PRJNA607982
SRA SRP250295

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Supplementary file Size Download File type/resource
GSE145713_NOD_3w_GFPminus_vs_B6_3w_GFPminus_DEseq2_Counts.txt.gz 1.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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