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| Status |
Public on Feb 23, 2021 |
| Title |
Mapping of epigenetic marks (H3K4me1, H3K4me3, H3K27ac), p300/CBP, PolII and CTCF on MDA-MB-231 genome |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
In the article "Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers" by Bejjani et al., we mapped epigenetic marks (H3K4me1, H3K4me3, H3K27ac), p300/CBP, PolII and CTCF to characterize the binding sites of Fra-1 and Fra-2 on MDA-MB-231 genome. Data for Fra-1 and Fra-2 ChIP-seq are available on GEO database, accession number GSE132098 (Tolza et al., 2019, MCR 17, 1999-2014)
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| Overall design |
ChIP-seq were carried out on MDA-MB-231 cells using antibodies specific of epigenetic marks (H3K4me1, H3K4me3, H3K27ac), p300/CBP, PolII and CTCF
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| Web link |
https://0-doi-org.brum.beds.ac.uk/10.1093/nar/gkab053
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| Contributor(s) |
Bejjani F, Tolza C, Maqbool MA, Piechaczyk M, Jariel-Encontre I |
| Citation(s) |
33533919, 37464380 |
| Submission date |
Mar 11, 2020 |
| Last update date |
Sep 12, 2023 |
| Contact name |
Isabelle Jariel-Encontre |
| E-mail(s) |
isabelle.jariel@inserm.fr
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| Phone |
00 33 (0)4 11 28 31 53
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| Organization name |
IRCM-U1194- INSERM
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| Street address |
208 Avenue des Apothicaires
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| City |
Montpellier |
| State/province |
Montpellier Cedex5 |
| ZIP/Postal code |
34298 |
| Country |
France |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (13)
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| This SubSeries is part of SuperSeries: |
| GSE146825 |
Transcriptional regulation by Fra-1 in triple negative breast cancers |
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| Relations |
| BioProject |
PRJNA612054 |
| SRA |
SRP252453 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE146822_WIGfs_CTCFA_B_unireads_elEst60_AThr57_bin50.wig.gz |
328.1 Mb |
(ftp)(http) |
WIG |
| GSE146822_WIGfs_CTCFA_B_unireads_elEst60_AThr57_bin50_peaks_50_50_50.bed.gz |
266.5 Kb |
(ftp)(http) |
BED |
| GSE146822_WIGfs_H3K27ac_merge_CT_7-8_unireads_bin50_Scaled_BGSub.wig.gz |
331.2 Mb |
(ftp)(http) |
WIG |
| GSE146822_WIGfs_H3K27ac_merge_CT_7-8_unireads_bin50_Scaled_BGSub_peaks_50_150_500.bed.gz |
288.5 Kb |
(ftp)(http) |
BED |
| GSE146822_WIGfs_H3K4me1_merge_CT_5-6_unireads_bin50_Scaled_BGSub.wig.gz |
323.1 Mb |
(ftp)(http) |
WIG |
| GSE146822_WIGfs_H3K4me1_merge_CT_5-6_unireads_bin50_Scaled_BGSub_peaks_30_250_1000.bed.gz |
610.3 Kb |
(ftp)(http) |
BED |
| GSE146822_WIGfs_H3K4me3_merge_CT_3-4_unireads_bin50_Scaled_BGSub.wig.gz |
338.2 Mb |
(ftp)(http) |
WIG |
| GSE146822_WIGfs_H3K4me3_merge_CT_3-4_unireads_bin50_Scaled_BGSub_peaks_30_150_500.bed.gz |
178.0 Kb |
(ftp)(http) |
BED |
| GSE146822_WIGfs_MDA231_PolII_CT_15-CT_16_unireads_bin50_Scaled.wig.gz |
334.2 Mb |
(ftp)(http) |
WIG |
| GSE146822_WIGfs_MDA231_PolII_CT_15-CT_16_unireads_bin50_Scaled_peaks_50_100_800.bed.gz |
182.4 Kb |
(ftp)(http) |
BED |
| GSE146822_WIGfs_MDA231_p300_CT_23_unireads_elEst60_AThr6_bin50_Scaled_BGSub.wig.gz |
297.3 Mb |
(ftp)(http) |
WIG |
| GSE146822_WIGfs_MDA231_p300_CT_23_unireads_elEst60_AThr6_bin50_Scaled_BGSub_peaks_60_50_50.bed.gz |
90.7 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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