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Series GSE150053 Query DataSets for GSE150053
Status Public on Nov 18, 2021
Title LaminB1-DamID analysis of differentiating 3T3L1 mouse pre-adipocytes with knock-down of Tmem120a and Tmem120b
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Maps of genomic regions in proximity to the nuclear lamina were determined in undifferentiated 3T3L1 preadipocytes and 9 day differentiated (wild type, and under Tmem120a or Tmem120a/b knockdown) adipocytes using DamID with a Dam-Lamin B1-encoding lentivirus.
 
Overall design Examination of Lamin B1-chromatin contacts in 3T3L1 derived adipocytes, and the effect of Tmem120a/b knock-down
 
Contributor(s) Batrakou DG, de las Heras JI, Schirmer EC
Citation(s) 35027552
Submission date May 07, 2020
Last update date Jan 31, 2022
Contact name Jose Ignacio de las Heras
E-mail(s) j.delasheras@ed.ac.uk
Organization name University of Edinburgh
Department Wellcome Trust Centre
Lab Swann 5.12
Street address Max Born Crescent
City Edinburgh
ZIP/Postal code EH9 3BF
Country United Kingdom
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (8)
GSM4551486 undifferentiated_Dam
GSM4551487 undifferentiated_LaminB1-Dam
GSM4551488 differentiated_Dam
This SubSeries is part of SuperSeries:
GSE150507 Analysis of differentiating 3T3L1 mouse pre-adipocytes with knock-down of Tmem120a and Tmem120b
Relations
BioProject PRJNA632606
SRA SRP261488

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE150053_DR1_D_08.bed.gz 17.9 Kb (ftp)(http) BED
GSE150053_DR1_U_08.bed.gz 20.0 Kb (ftp)(http) BED
GSE150053_LADs_D_15cut_sm0_X.bed.gz 37.4 Kb (ftp)(http) BED
GSE150053_LADs_U_15cut_sm0_X.bed.gz 56.8 Kb (ftp)(http) BED
GSE150053_LADs_kdAB_15cut_sm0_X.bed.gz 99.1 Kb (ftp)(http) BED
GSE150053_LADs_kdA_15cut_sm0_X.bed.gz 82.0 Kb (ftp)(http) BED
GSE150053_RAW.tar 245.0 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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