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Series GSE150987 Query DataSets for GSE150987
Status Public on May 01, 2021
Title Expression profiles of skeletal muscle from transgenic mouse with liver specific overexpression
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to evaluate the effects of liver-specific E4BP4 overexpression under mouse albumin promoter on the muscle glucose and lipid metabolism.
Methods: We generated transgenic mice (TG) with liver-specific E4BP4 overexpression. Gasrocnemius muscles were isolated at Zeitgeber Time (ZT) 0 or 12 from transgenic mice and WT littermates, and total RNA was extracted. Muscle RNA profiles were generated by deep sequencing for four groups with three mouse samples each.
Results: There were no significant differences between WT and transgenic mice at both ZT0 and 12.
Conclusions: Muscle metabolism was not altered at the transcription level by liver specific overexpression of E4BP4.
 
Overall design Muscle mRNA profiles of 8-week old wild type mice and transgenic mice with liver-specific E4BP4 overexpression
 
Contributor(s) Ohta Y, Taguchi A, Tanizawa Y
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Submission date May 21, 2020
Last update date May 01, 2021
Contact name Akihiko Taguchi
E-mail(s) a.tgc@yamaguchi-u.ac.jp
Organization name Yamaguchi University
Street address 1-1-1 minamikogushi
City Ube
State/province Yamaguchi
ZIP/Postal code 7558505
Country Japan
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (12)
GSM4563398 Wild Type ZT0-1 [W0-1]
GSM4563399 Wild Type ZT0-2 [W0-2]
GSM4563400 Wild Type ZT0-3 [W0-3]
Relations
BioProject PRJNA634327
SRA SRP262621

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE150987_E4BP4TGmuscleRNAseqCountTPM.txt.gz 359.7 Kb (ftp)(http) TXT
GSE150987_E4BP4TGmuscleWTvsTGC_ZT0.txt.gz 1.4 Mb (ftp)(http) TXT
GSE150987_E4BP4TGmuscleWTvsTGC_ZT12.txt.gz 1.5 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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