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GEO accession:
Series GSE151910
Query DataSets for GSE151910
Status
Public on Nov 07, 2020
Title
Loop Extrusion Mediates Physiological Locus Contraction for V(D)J Recombination
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Jun 05, 2020
Last update date
Nov 09, 2020
Contact name
Frederick W Alt
E-mail(s)
jianqiao.hu@childrens.harvard.edu
Organization name
Boston Children's Hospital
Department
PCMM
Lab
Alt
Street address
1 Blackfan Circle
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (2)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21626
NextSeq 550 (Mus musculus)
Samples (138)
Less...
More...
GSM4593283
JH1-4_WT_BM_rep1
GSM4593284
JH1-4_WT_BM_rep2
GSM4593285
JH1-4_WT_BM_rep3
GSM4593286
JH1-4_WT_BM_pooled_rep2/3
GSM4593287
JH1-4_WT_BM_rep4
GSM4593288
JH1-4_INV_BM_rep1
GSM4593289
JH1-4_INV_BM_rep2
GSM4593290
JH1-4_INV_BM_rep3
GSM4593291
JH1-4_INV_BM_rep4
GSM4593292
JH1-4_INV_BM_pooled_rep2/3
GSM4593293
JH1-4_Primary_Untreated_rep1
GSM4593294
JH1-4_Primary_Untreated_rep2
GSM4593295
JH1-4_Primary_Untreated_rep3
GSM4593296
JH1-4_Wapl-degron_Untreated_rep1
GSM4593297
JH1-4_Wapl-degron_Untreated_rep2
GSM4593298
JH1-4_Wapl-degron_Untreated_rep3
GSM4593299
JH1-4_Wapl-degron_Untreated_pooled_rep1-3
GSM4593300
JH1-4_Wapl-degron_IAADox_rep1
GSM4593301
JH1-4_Wapl-degron_IAADox_rep2
GSM4593302
JH1-4_Wapl-degron_IAADox_rep3
GSM4593303
JH1-4_Wapl-degron_IAADox_pooled_rep1-3
GSM4593304
JH1-4_Wapl-degron_single igh_Untreated_rep1
GSM4593305
JH1-4_Wapl-degron_single igh_Untreated_rep2
GSM4593306
JH1-4_Wapl-degron_single igh_Untreated_rep3
GSM4593308
BM_proB_WT_GRO_rep1
GSM4593309
BM_proB_WT_GRO_rep2
GSM4593310
BM_proB_WT_GRO_rep3
GSM4593311
BM_proB_WT_GRO_rep4
GSM4593312
BM_proB_Igh_Inversion_GRO_rep1
GSM4593313
BM_proB_Igh_Inversion_GRO_rep2
GSM4593314
BM_proB_Igh_Inversion_GRO_rep3
GSM4593315
BM_proB_Igh_Inversion_GRO_rep4
GSM4593316
v-Abl_proB_Wapl_degron_NT_GRO_rep1
GSM4593317
v-Abl_proB_Wapl_degron_NT_GRO_rep2
GSM4593318
v-Abl_proB_Wapl_degron_NT_GRO_rep3
GSM4593319
v-Abl_proB_Wapl_degron_IAADox_GRO_rep1
GSM4593320
v-Abl_proB_Wapl_degron_IAADox_GRO_rep2
GSM4593321
v-Abl_proB_Wapl_degron_IAADox_GRO_rep3
GSM4593322
BMWTRad21ChIP_rep1
GSM4593323
BMWTRad21ChIP_rep2
GSM4593324
BMWTRad21ChIP_rep3
GSM4593325
BMWTRad211WAPL2ChIP_Input_rep
GSM4593326
BMWTRad21ChIP_Input_rep2
GSM4593327
BMWTRad21ChIP_Input_rep3
GSM4593328
BMINVRad21ChIP_rep1
GSM4593329
BMINVRad21ChIP_rep2
GSM4593330
BMINVRad21ChIP_Input_rep1
GSM4593331
BMINVRad21ChIP_Input_rep2
GSM4593332
BMWAPLChIP_rep1
GSM4593333
BMWAPLChIP_rep2
GSM4593334
BMWAPLChIP_rep3
GSM4593335
BMWAPLChIP_Input_rep1
GSM4593336
BMWAPLChIP_Input_rep3
GSM4593337
VAblRad21ChIPUntreated_rep1
GSM4593338
VAblRad21ChIPUntreated_rep2
GSM4593339
VAblRad21ChIPUntreated_rep3
GSM4593340
VAblRad21ChIPUntreated_Input_rep1
GSM4593341
VAblRad21ChIPUntreated_Input_rep2
GSM4593342
VAblRad21ChIPDOXIAA_rep1
GSM4593343
VAblRad21ChIPDOXIAA_rep2
GSM4593344
VAblRad21ChIPDOXIAA_rep3
GSM4593345
VAblRad21ChIPDOXIAA_Input_rep1
GSM4593346
VAblRad21ChIPDOXIAA_Input_rep2
GSM4593347
VAblWAPLChIPUntreated_rep1
GSM4593348
VAblWAPLChIPUntreated_rep2
GSM4593349
VAblWAPLChIPUntreated_rep3
GSM4593350
VAblWAPLChIPDOXIAA_rep1
GSM4593351
VAblWAPLChIPDOXIAA_rep2
GSM4593352
VAblWAPLChIPDOXIAA_rep3
GSM4593353
VAblCTCFChIPUntreated_rep1
GSM4593354
VAblCTCFChIPUntreated_rep2
GSM4593355
VAblCTCFChIPUntreated_rep3
GSM4593356
VAblCTCFChIPDOXIAA_rep1
GSM4593357
VAblCTCFChIPDOXIAA_rep2
GSM4593358
VAblCTCFChIPDOXIAA_rep3
GSM4593359
VAblCTCF13WAPL13ChIPUntreated_Input_rep1
GSM4593360
VAblCTCF13WAPL13ChIPDOXIAA_Input_rep1
GSM4593361
VAblCTCF2WAPL2Rad213ChIPUntreated_Input_rep2
GSM4593362
VAblCTCF2WAPL2Rad213ChIPDOXIAA_Input_rep2
GSM4593363
BM_WT_3C_RCbait_rep1
GSM4593364
BM_WT_3C_RCbait_rep2
GSM4593366
BM_INV_3C_RCbait_rep1
GSM4593367
BM_INV_3C_RCbait_rep2
GSM4593368
BM_INV_3C_RCbait_rep3
GSM4593377
VAbl3CRCbaitUntreated-RC_rep1
GSM4593378
VAbl3CRCbaitUntreated-RC_rep2
GSM4593379
VAbl3CRCbaitUntreated-RC_rep3
GSM4593380
VAbl3CRCbaitDOXIAA-RC_rep1
GSM4593381
VAbl3CRCbaitDOXIAA-RC_rep2
GSM4593382
VAbl3CRCbaitDOXIAA-RC_rep3
GSM4801127
BMWTCTCFChIP_rep1
GSM4801128
BMWTCTCFChIP_rep2
GSM4801129
BMWTCTCFChIP_rep3
GSM4801130
BMWTCTCFChIP_Input_rep1
GSM4801131
BMWTCTCFChIP_Input_rep23
GSM4801132
BMINVCTCFChIP_rep1
GSM4801133
BMINVCTCFChIP_rep2
GSM4801134
BMINVCTCFChIP_rep3
GSM4801135
BMINVCTCFChIP_Input_rep1
GSM4801136
BMINVCTCFChIP_Input_rep23
GSM4801137
BMINVRad21ChIP_rep3
GSM4801138
BMINVRad21ChIP_Input_rep3
GSM4801139
VAblRad21ChIPUntreated_rep4
GSM4801140
VAblRad21ChIPUntreated_Input_rep4
GSM4801141
VAblRad21ChIPDOXIAA_rep4
GSM4801142
VAblRad21ChIPDOXIAA_Input_rep4
GSM4801143
BM_WT_3C_3CBEbait_rep1
GSM4801144
BM_WT_3C_3CBEbait_rep2
GSM4801145
BM_WT_3C_3CBEbait_rep3
GSM4801146
BM_INV_3C_3CBEbait_rep1
GSM4801147
BM_INV_3C_3CBEbait_rep2
GSM4801148
BM_INV_3C_3CBEbait_rep3
GSM4801149
BM_INV_3C_3CBEbait_rep4
GSM4804868
JH1-4_Wapl-degron_single igh_IAADox_rep1
GSM4804869
JH1-4_Wapl-degron_single igh_IAADox_rep2
GSM4804870
JH1-4_Wapl-degron_single igh_IAADox_rep3
GSM4886886
WT_Splenic_Nonproductive_Rep1
GSM4886887
WT_Splenic_Nonproductive_Rep2
GSM4886888
WT_Splenic_Nonproductive_Rep3
GSM4886889
3‘CBE KO_Splenic_Nonproductive_Rep1
GSM4886890
3'CBE KO_Splenic_Nonproductive_Rep2
GSM4886891
3'CBE KO_Splenic_Nonproductive_Rep3
GSM4886892
JH1-4_Wapl-degron_single Igh_INV_IAADox_rep1
GSM4886893
JH1-4_Wapl-degron_single Igh_INV_IAADox_rep2
GSM4886894
JH1-4_Wapl-degron_single Igh_INV_IAADox_rep3
GSM4886895
v-Abl_cycling_Rep1
GSM4886896
v-Abl_cycling_Rep2
GSM4886897
v-Abl_cycling_Rep3
GSM4886898
v-Abl_cycling_Rep4
GSM4886899
BM_PreB_Rep1
GSM4886900
BM_PreB_Rep2
GSM4886901
BM_PreB_Rep3
GSM4886902
Untreated_Wapl-degron_rep1
GSM4886903
Untreated_Wapl-degron_rep2
GSM4886904
Untreated_Wapl-degron_rep3
GSM4886905
IAADox_Wapl-degron_rep1
GSM4886906
IAADox_Wapl-degron_rep2
GSM4886907
BM_WT_3C_RCbait_rep3
This SuperSeries is composed of the following SubSeries:
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More...
GSE151906
Loop Extrusion Mediates Physiological Locus Contraction for V(D)J Recombination (LAM-HTGTS)
GSE151907
Loop Extrusion Mediates Physiological Locus Contraction for V(D)J Recombination (GRO-Seq)
GSE151908
Loop Extrusion Mediates Physiological Locus Contraction for V(D)J Recombination (ChIP-Seq)
GSE151909
Loop Extrusion Mediates Physiological Locus Contraction for V(D)J Recombination (3C-HTGTS)
Relations
BioProject
PRJNA637627
Download family
Format
SOFT formatted family file(s)
SOFT
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MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE151910_RAW.tar
29.6 Gb
(http)
(custom)
TAR (of BEDGRAPH, BW, TXT, XLS)
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