 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Aug 05, 2021 |
| Title |
Gene expression of two Ewing sarcoma cell lines (SK-N-MC, RDES), transfected with inducible shControl or two different shRNA against PRC1 |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
This dataset comprises trnscriptome data of two Ewing sarcoma cell lines (SK-N-MC and RDES) after knockdown of the gene PRC1
|
| |
|
| Overall design |
12 samples were normalized (log2) with Affymetrix Expression Console Software (v1.4) using SST-RMA algorithm. Gene expression data were annotated at gene level with the Affymetrix library for Clariom D arrays (human).
|
| |
|
| Contributor(s) |
Li J, Orth MF, Grünewald TG |
| Citation(s) |
34531368 |
| Submission date |
Aug 20, 2020 |
| Last update date |
Oct 13, 2021 |
| Contact name |
Thomas Georg Philipp Grunewald |
| E-mail(s) |
t.gruenewald@kitz-heidelberg.de
|
| Phone |
0049-6221-423718
|
| Organization name |
German Cancer Research Center (DKFZ)
|
| Department |
Division of Translational Pediatric Sarcoma Research
|
| Street address |
Im Neuenheimer Feld 280
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL23126 |
[Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version] |
|
| Samples (12)
|
| GSM4733566 |
SK-N-MC_shControl_dox-, 1 biologial Rep, 60h |
| GSM4733567 |
SK-N-MC_shControl_dox+, 1 biologial Rep, 60h |
| GSM4733568 |
SK-N-MC_shPRC1_cds_dox-, 1 biologial Rep, 60h |
| GSM4733569 |
SK-N-MC_shPRC1_cds_dox+, 1 biologial Rep, 60h |
| GSM4733570 |
SK-N-MC_shPRC1_utr_dox-, 1 biologial Rep, 60h |
| GSM4733571 |
SK-N-MC_shPRC1_utr_dox+, 1 biologial Rep, 60h |
| GSM4733572 |
RDES_shControl_dox-, 1 biologial Rep, 60h |
| GSM4733573 |
RDES_shControl_dox+, 1 biologial Rep, 60h |
| GSM4733574 |
RDES_shPRC1_cds_dox-, 1 biologial Rep, 60h |
| GSM4733575 |
RDES_shPRC1_cds_dox+, 1 biologial Rep, 60h |
| GSM4733576 |
RDES_shPRC1_utr_dox-, 1 biologial Rep, 60h |
| GSM4733577 |
RDES_shPRC1_utr_dox+, 1 biologial Rep, 60h |
|
| Relations |
| BioProject |
PRJNA658340 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE156559_RAW.tar |
303.5 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
|
|
|
|
 |
Less...
More...