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Series GSE15689 Query DataSets for GSE15689
Status Public on Apr 18, 2009
Title A complementary role for ELF3 and TFL1 in the regulation of flowering time by ambient temperature.
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Plants regulate their time to flowering by gathering information from the environment. Photoperiod and temperature are among the most important environmental variables. Suboptimal, but not near-freezing, temperatures regulate flowering through the thermosensory pathway, which overlaps with the autonomous pathway. Here we show that ambient temperature regulates flowering by two genetically distinguishable pathways, one that requires TFL1 and another that requires ELF3. The delay in flowering time observed at lower temperatures was partially suppressed in single elf3 and tfl1 mutants, whereas double elf3 tfl1 mutants were insensitive to temperature. tfl1 mutations abolished the temperature response in cryptochrome mutants that are deficient in photoperiod perception, but not in phyB mutants that have a constitutive photoperiodic response. Contrary to tfl1, elf3 mutations were able to suppress the temperature response in phyB mutants, but not in cryptochrome mutants. The gene expression profile revealed that the tfl1 and elf3 effects are due to the activation of different sets of genes and identified CCA1 and SOC1/AGL20 as being important cross talk points. Finally, genome-wide gene expression analysis strongly suggests a general and complementary role for ELF3 and TFL1 in temperature signalling.
 
Overall design Three genotypes, WT (Columbia), elf3-7 and tfl1-1 mutants. Three biological replicates for each condition (genotype X temperature combination). RNA prepared independently for each sample.
 
Contributor(s) Strasser B, Alvarez MJ, Califano A, Cerdan PD
Citation(s) 19187043
Submission date Apr 15, 2009
Last update date Aug 28, 2018
Contact name Pablo Diego Cerdan
URL http://www.leloir.org.ar
Organization name Fundacion Instituto Leloir
Lab Plant Molecular Biology
Street address Av. Patricias Argentinas 435
City Ciudad de Buenos Aires
ZIP/Postal code 1405
Country Argentina
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (18)
GSM392180 WT-16ºC-RepA
GSM392263 WT-16ºC-RepB
GSM392273 WT-16ºC-RepC
Relations
Affiliated with GSE69995
BioProject PRJNA116641

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15689_RAW.tar 36.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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