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Series GSE156925 Query DataSets for GSE156925
Status Public on Aug 27, 2020
Title TRAP-Seq uncovers post-transcriptional gene regulation after acute sleep deprivation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To identify the effects of sleep deprivation on the translatome, we took advantage of the RiboTag mouse line with an HA labeled ribosomal protein to express labeled Rpl22 in CaMKIIa neurons to selectively isolate and then sequence mRNA transcripts associated with ribosomes
 
Overall design Ribosome associated mRNA from hippocampus of 2-3 months male mice.
 
Citation(s) 33272296
BioProject PRJNA659422
Submission date Aug 26, 2020
Last update date Dec 08, 2020
Contact name Yann Vanrobaeys
E-mail(s) yann-vanrobaeys@uiowa.edu
Phone 5059139210
Organization name University of Iowa
Department Neuroscience
Lab Ted Abel
Street address 2312 PBDB, 169 Newton Road
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (11)
GSM4748276 NSD2
GSM4748277 NSD3
GSM4748278 NSD4
Relations
SRA SRP278796

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE156925_raw_counts_matrix.txt.gz 676.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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