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Series GSE157349 Query DataSets for GSE157349
Status Public on Sep 25, 2020
Title Nucleus deformation by microtubules during early steps of hematopoiesis
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Cells from the myeloid and lymphoid lineages fulfill distinct functions with specific shapes and intra-cellular architectures. The role of cytokines in the regulation of HSC differentiation has been intensively studied but our understanding of the potential contribution of inner cell architecture is relatively poor. Here we studied the early commitment of human HSC and identified specific microtubule network rearrangements and nucleus shape changes that accompany cells differentiation toward the myeloid lineage. This work established the role of microtubules in the mechanical regulation of nucleus shape, chromatin architecture and HSC differentiation and open new perspectives in our appreciation of the implication of intra-cellular forces in the early specification of the myeloid lineage.
 
Overall design We compared the transcriptome of HSCs differentiated for 3 days in normal culture medium, to the transcriptome of HSCs cultured in the same manner but treated with the dynein inhibitor ciliobrevin D (CILIO) or taxol (TX) between day 2 and day 3.
 
Contributor(s) Biedzinski S, Faivre L, Vianay B, Delord M, Blanchoin L, Larghero J, Théry M, Brunet S
Citation(s) 33089509
Submission date Sep 02, 2020
Last update date Oct 27, 2020
Contact name Marc Delord
E-mail(s) mdelord@gmail.com
Organization name Centre hospitalier de Versailles
Department Recherche clinique
Street address Hopital Saint-Louis, 1 avenue Claude Vellefaux
City Paris
ZIP/Postal code 75010
Country France
 
Platforms (1)
GPL23126 [Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version]
Samples (9)
GSM4762361 D19-CILIO
GSM4762364 D19-CTRL
GSM4762367 D19-TX
Relations
BioProject PRJNA661035

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157349_RAW.tar 199.5 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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