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Series GSE157382 Query DataSets for GSE157382
Status Public on Oct 21, 2020
Title Subunit vaccine elicited lung TRM cells use fibroblast IL-17R signaling to provide serotype independent immunity against hypervirulent K. pneumoniae
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Subunit vaccine conferred lung protection against heterologous strain through the augmentaion of lung tissue resident memmory CD4+ T-cells.
 
Overall design ①We immunized WT C57BL/6 mice with OmpX+LTA1 or heat killed Klebsiella pneumoniae (ATCC 43816) twice 3 weeks apart, and 1 more week later we euthanized and removed the lung for single cell suspensions in addition to naive spleen cells. ②Our data had indicated that 24 hours post pulmonary infection of K1 strain at 10e4 CFU reveals quite higher bacterial burden in Il17raDermoCre postivie mice than in Il17raDermoCre negative mice, and therefore we harvested lung tissues to obatin RNA for bulk RNAseq at 4 hours post infection because any differences in gene expression would not be due to differences in lung bacterial burdens.
 
Contributor(s) Kolls JK
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Submission date Sep 02, 2020
Last update date Oct 21, 2020
Contact name Jay Kolls
Organization name Tulane University
Department Medicine
Lab Center for Translational Research in Infection and Inflammation
Street address 1430 Tulane Ave
City New Orleans
State/province LA
ZIP/Postal code 70112
Country USA
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (12)
GSM4763889 B6_Naive_Spleen_CD4pos_1
GSM4763890 B6_Naive_Spleen_CD4pos_2
GSM4763891 B6_HKdKPvac_Lung_CD4pos_1
Relations
BioProject PRJNA661089
SRA SRP279855

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157382_IL17raDermoCre_abundance.fpkm.txt.gz 499.9 Kb (ftp)(http) TXT
GSE157382_IL17raDermoCre_abundance.htseq.txt.gz 342.6 Kb (ftp)(http) TXT
GSE157382_NI_vac_agg_filtered_feature_bc_matrix.h5 31.1 Mb (ftp)(http) H5
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Raw data are available in SRA
Processed data are available on Series record

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