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| Status |
Public on Nov 11, 2020 |
| Title |
Long-Term Soy Protein Isolate Intake Reduces Liver Steatosis through Changes in Global Gene Expression in Obese Zucker Rats |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To understand how soy protein isolate (SPI) reduced liver steatosis in male obese Zucker rats, we conducted global gene expression (RNAseq) analysis on liver samples of male rats fed either the SPI or a control casein (CAS)-based diet (n=8 per group) for 16 wks. Bioinformatics was conducted using Ingenuity Pathway Analysis (IPA) software (Qiagen, CA) with P < 0.05 and 1.3 fold differential expression cutoff values.
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| |
|
| Overall design |
Liver transcriptomics was analyzed using an Ilumina HiSeq system with 50 base pair single end read method.
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| |
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| Contributor(s) |
Kong B, Bottje W, Hakkak R |
| Citation(s) |
33363197, 34262928 |
| Submission date |
Sep 25, 2020 |
| Last update date |
Jul 20, 2021 |
| Contact name |
Byung-whi Kong |
| E-mail(s) |
bkong@uark.edu
|
| Phone |
479-575-5494
|
| Organization name |
University of Arkansas
|
| Department |
Poultry Science
|
| Street address |
1260 W. Maple, POSC, L-426
|
| City |
Fayetteville |
| State/province |
AR |
| ZIP/Postal code |
72701 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL22396 |
Illumina HiSeq 4000 (Rattus norvegicus) |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA665630 |
| SRA |
SRP285361 |
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