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| Status |
Public on Jun 01, 2009 |
| Title |
Transcript profiling in LTR mutants |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
|
| Summary |
STN7-dependent phosphorylation of an as yet unknown thylakoid protein triggers the signaling events associated with the long-term acclimatory response (LTR). The LTR-associated signaling events regulate the expression of photosynthesis-related genes on the post-transcriptional level (nucleus), as indicated by transcript profiling in LTR mutants.
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| Overall design |
5 µg of total RNA of two to three biological replicates of the different pools (10 plants each pool) of rosette leaves of 4-week-old Col-0, Wassilewskija, stn7-1, psad1-1, stn7-1 psad1-1, psae1-3 and stn7-1 psae1-3 plants was processed and hybridized to a GeneChip Arabidopsis ATH1 Genome Array using the One-Cycle Target Labeling and Control Reagents according to the manufacturer’s instructions (Affymetrix); psad1 (2 replicates) psad1 stn7 (3 replicates) Col-0 (3 replicates) Ws (2 replicates) psae (2 replicates) psae stn7 (2 replicates) stn7 (3 replicates)
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| Contributor(s) |
Pesaresi P, Leister D |
| Citation(s) |
19706797 |
| Submission date |
May 04, 2009 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Michael Scharfenberg |
| E-mail(s) |
scharfenberg@lrz.uni-muenchen.de
|
| Organization name |
LMU München
|
| Department |
Botanik I
|
| Lab |
Dario Leister
|
| Street address |
Großhaderner Str. 2-4
|
| City |
Planegg |
| State/province |
Bayern |
| ZIP/Postal code |
D-82152 |
| Country |
Germany |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (17)
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| Relations |
| Affiliated with |
GSE69995 |
| BioProject |
PRJNA116987 |
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