|
| Status |
Public on Jun 03, 2021 |
| Title |
PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ChIP-seq) |
| Organism |
Strongylocentrotus purpuratus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers.
|
| |
|
| Overall design |
Machine learning models are trained and tested wit the different epigenetic marks for the prediction of genomic with active reporter gene activity.
|
| |
|
| Contributor(s) |
Ercan S, Arenas-Mena C |
| Citation(s) |
34666684 |
| Submission date |
Oct 29, 2020 |
| Last update date |
Jun 01, 2023 |
| Contact name |
Cesar Arenas-Mena |
| E-mail(s) |
cesar.arenasmena@csi.cuny.edu
|
| Organization name |
CSI CUNY
|
| Department |
Biology
|
| Street address |
2800 Victory Boulevard
|
| City |
Staten Island |
| State/province |
New York |
| ZIP/Postal code |
10314 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL20965 |
Illumina HiSeq 2500 (Strongylocentrotus purpuratus) |
|
| Samples (6)
|
| GSM4873711 |
Input-corr-ChIP 643__SeaUrchin_emb_Ext 210 |
| GSM4873712 |
Input-corr-ChIP 644__SeaUrchin_emb_Ext 211 |
| GSM4873713 |
Input__SeaUrchin_embryos_Ext 179 |
|
| This SubSeries is part of SuperSeries: |
| GSE160463 |
PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos |
|
| Relations |
| BioProject |
PRJNA673238 |
| SRA |
SRP289841 |
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