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Series GSE161058 Query DataSets for GSE161058
Status Public on May 01, 2021
Title Reduced frequencies and functional impairment of dendritic cell subsets and non-classical monocytes in MDS
Organism Homo sapiens
Experiment type Expression profiling by array
Summary In myelodysplastic syndromes (MDS) the immune system is involved in pathogenesis as well as in disease progression. Dendritic cells (DC) are key players of the immune system by serving as regulators of immune responses. Their function has been scarcely studied in MDS and most of the reported studies didn’t investigate naturally occurring DC subsets. Therefore, we here examined the frequency and function of DC subsets and slan+ non-classical monocytes in various MDS risk groups. Frequencies of DC as well as of slan+ monocytes were decreased in MDS bone marrow (BM) compared to normal bone marrow (NBM) samples. Transcriptional profiling revealed down-regulation of transcripts related to pro-inflammatory pathways in MDS-derived cells as compared to NBM. Additionally, their capacity to induce T cell proliferation was impaired. Multidimensional mass cytometry showed that whereas healthy donor-derived slan+ monocytes supported Th1/Th17/Treg differentiation/expansion their MDS-derived counterparts also mediated substantial Th2 expansion. Our findings point to a role for an impaired ability of DC subsets to adequately respond to cellular stress and DNA damage in the immune escape and progression of MDS. As such, it paves the way toward potential novel immunotherapeutic interventions.
 
Overall design Genome-wide transcriptional analysis of cDC2 and slan+ monocytes from healthy donor- and MDS-derived bone marrow.
 
Contributor(s) van Leeuwen-Kerkhoff N, Westers TM, Poddighe PJ, Povoleri GA, Timms JA, Kordasti S, de Gruijl TD, van de Loosdrecht AA
Citation(s) 33567812
Submission date Nov 09, 2020
Last update date Mar 31, 2022
Contact name Nathalie van Leeuwen-Kerkhoff
E-mail(s) n.kerkhoff@amsterdamumc.nl
Organization name Amsterdam UMC
Lab Nathalie van Leeuwen-Kerkhoff
Street address De Boelelaan 1117
City Utrecht
State/province The Netherlands
ZIP/Postal code 3581 JT
Country Netherlands
 
Platforms (1)
GPL23126 [Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version]
Samples (14)
GSM4889041 HD3 - cDC2
GSM4889042 HD1 - cDC2
GSM4889043 HD2 - cDC2
Relations
BioProject PRJNA675462

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Supplementary file Size Download File type/resource
GSE161058_RAW.tar 350.4 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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