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GEO accession:
Series GSE161676
Query DataSets for GSE161676
Status
Public on Nov 08, 2021
Title
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution
Organisms
Mus musculus
;
synthetic construct
Experiment type
Expression profiling by high throughput sequencing
Other
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34880496
Submission date
Nov 17, 2020
Last update date
Jan 17, 2022
Contact name
Mark Dawson
E-mail(s)
mark.dawson@petermac.org
Organization name
Peter MacCallum Cancer Centre
Street address
305 Grattan Street
City
Melbourne
State/province
VIC
ZIP/Postal code
3000
Country
Australia
Platforms (3)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL19424
Illumina NextSeq 500 (synthetic construct)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (271)
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More...
GSM4912381
GFP barcode reference ibrary
GSM4912382
BFP barcode reference ibrary
GSM4912383
mCHERRY barcode reference ibrary
GSM4912384
In vitro barcoding Pool 1
GSM4912385
In vitro barcoding Pool 2
GSM4912386
MOUSE17 BM
GSM4912387
MOUSE17 SPL
GSM4912388
MOUSE18 BM
GSM4912389
MOUSE18 SPL
GSM4912390
Baseline KF05
GSM4912391
MOUSE14 BM
GSM4912392
MOUSE14 SPL
GSM4912393
MOUSE15 BM
GSM4912394
MOUSE15 SPL
GSM4912395
mll-af9 + kras g12d/+ (KF05)
GSM4912408
MLL-AF9 rep1
GSM4912409
MLL-AF9 rep2
GSM4912410
MLL-AF9 + Flt3 ITD/ITD rep1
GSM4912411
MLL-AF9 + Flt3 ITD/ITD rep2
GSM4912412
MLL-AF9 + Kras G12D/+ rep1
GSM4912413
MLL-AF9 + Kras G12D/+ rep2
GSM4912414
Ptprca_mouse1_BM
GSM4912415
Ptprca_mouse1_spleen
GSM4912416
Ptprca_mouse2_BM
GSM4912417
Ptprca_mouse2_spleen
GSM4912418
Ptprca_mouse3_BM
GSM4912419
Ptprca_mouse3_spleen
GSM4912420
NSG_mouse4_BM
GSM4912421
NSG_mouse4_spleen
GSM4912422
NSG_mouse5_BM
GSM4912423
NSG_mouse5_spleen
GSM4912424
NSG_mouse6_BM
GSM4912425
NSG_mouse6_spleen
GSM4912426
Baseline KF08
GSM4912480
MLL-AF9 baseline
GSM4912481
Ptprca Disease mouse 1
GSM4912482
PtprcaDisease mouse 2
GSM4912483
NSG Disease mouse 4
GSM4912484
NSG Disease mouse 6
GSM4912485
MLL-AF9 baseline ATAC
GSM4912497
Donor Mouse 2 NSG Bone Marrow
GSM4912498
Donor Mouse 2 NSG Spleen
GSM4912499
Donor Mouse 1 NSG Bone Marrow
GSM4912500
Donor Mouse 1 NSG Spleen
GSM4912501
Donor Mouse 2 PTPRCA Bone Marrow
GSM4912502
Donor Mouse 2 PTPRCA Spleen
GSM4912503
Donor Mouse 1 PTPRCA Bone Marrow
GSM4912504
Donor Mouse 1 PTPRCA Spleen
GSM4912505
Donor Mouse 2 baseline
GSM4912506
Donor Mouse 1 baseline
GSM4912509
KRAS_MOUSE6_BM
GSM4912510
KRAS_MOUSE7_BM
GSM4912511
KRAS_MOUSE8_BM
GSM4912512
KRAS_MOUSE9_BM
GSM4912513
KRAS_MOUSE6_SPL
GSM4912514
KRAS_MOUSE7_SPL
GSM4912515
KRAS_MOUSE8_SPL
GSM4912516
KRAS_MOUSE9_SPL
GSM4912517
KRAS_Baseline
GSM4912518
FLT3_MOUSE11_BM
GSM4912519
FLT3_MOUSE12_BM
GSM4912520
FLT3_MOUSE13_BM
GSM4912521
FLT3_MOUSE14_BM
GSM4912522
FLT3_MOUSE15_BM
GSM4912523
FLT3_MOUSE11_SPL
GSM4912524
FLT3_MOUSE12_SPL
GSM4912525
FLT3_MOUSE13_SPL 1
GSM4912526
FLT3_MOUSE13_SPL 2
GSM4912527
FLT3_MOUSE14_SPL
GSM4912528
FLT3_MOUSE15_SPL
GSM4912529
FLT3_Baseline
GSM4912530
MLL_MOUSE1_BM
GSM4912531
MLL_MOUSE2_BM
GSM4912532
MLL_MOUSE3_BM
GSM4912533
MLL_MOUSE4_BM
GSM4912534
MLL_MOUSE1_SPL
GSM4912535
MLL_MOUSE2_SPL
GSM4912536
MLL_MOUSE3_SPL
GSM4912537
MLL_MOUSE4_SPL
GSM4912538
MLL_Baseline
GSM4912539
80-15-5_MOUSE22_SPL
GSM4912540
80-15-5_MOUSE23_SPL
GSM4912541
80-15-5_MOUSE24_SPL
GSM4912542
80-15-5_MOUSE25_SPL
GSM4912543
80-15-5_MOUSE22_BM
GSM4912544
80-15-5_MOUSE23_BM
GSM4912545
80-15-5_MOUSE24_BM
GSM4912546
80-15-5_MOUSE25_BM
GSM4912547
80-15-5_Baseline
GSM4912548
mll-af9 (KF09)
GSM4912549
mll-af9 + flt3 itd/itd (KF09)
GSM4912550
mll-af9 + kras g12d/+ (KF09)
GSM4912551
Pool 1 - MLL-AF9 KRAS M8 & MLL M2
GSM4912552
Pool 2 - FLT3 M11 & COMBO 1-1-1 M17
GSM4912553
Pool 3 - MLL M3 & FLT3 M12
GSM4912554
Pool 4 - COMBO 1-1-1 M19 & COMBO 80-15-5 M22
GSM4912555
Pool 5 - KRAS M10 & COMBO 80-15-5 M24
GSM5643418
KF15_Ptprca_M1_BM_LSK_PCR1
GSM5643419
KF15_Ptprca_M1_BM_LSK_PCR2
GSM5643420
KF15_Ptprca_M2_BM_LSK_PCR1
GSM5643421
KF15_Ptprca_M2_BM_LSK_PCR2
GSM5643422
KF15_Ptprca_M3_BM_LSK_PCR1
GSM5643423
KF15_Ptprca_M3_BM_LSK_PCR2
GSM5643424
KF15_Ptprca_M5_BM_GMP_PCR1
GSM5643425
KF15_Ptprca_M5_BM_GMP_PCR2
GSM5643426
KF15_Ptprca_M6_BM_GMP_PCR1
GSM5643427
KF15_Ptprca_M6_BM_GMP_PCR2
GSM5643428
KF15_Ptprca_M7_BM_GMP_PCR1
GSM5643429
KF15_Ptprca_M7_BM_GMP_PCR2
GSM5643430
KF15_Ptprca_M8_BM_GMP_PCR1
GSM5643431
KF15_Ptprca_M8_BM_GMP_PCR2
GSM5643432
KF15_NSG_M9_BM_LSK_PCR1
GSM5643433
KF15_NSG_M9_BM_LSK_PCR2
GSM5643434
KF15_NSG_M10_BM_LSK_PCR1
GSM5643435
KF15_NSG_M10_BM_LSK_PCR2
GSM5643436
KF15_NSG_M11_BM_LSK_PCR1
GSM5643437
KF15_NSG_M11_BM_LSK_PCR2
GSM5643438
KF15_NSG_M12_BM_LSK_PCR1
GSM5643439
KF15_NSG_M12_BM_LSK_PCR2
GSM5643440
KF15_NSG_M13_BM_GMP_PCR1
GSM5643441
KF15_NSG_M13_BM_GMP_PCR2
GSM5643442
KF15_NSG_M14_BM_GMP_PCR1
GSM5643443
KF15_NSG_M14_BM_GMP_PCR2
GSM5643444
KF15_NSG_M15_BM_GMP_PCR1
GSM5643445
KF15_NSG_M15_BM_GMP_PCR2
GSM5643446
KF15_NSG_M16_BM_GMP_PCR1
GSM5643447
KF15_NSG_M16_BM_GMP_PCR2
GSM5643448
KF15_Ptprca_M17_BM_LSK_GMP_PCR1
GSM5643449
KF15_Ptprca_M17_BM_LSK_GMP_PCR2
GSM5643450
KF15_Ptprca_M18_BM_LSK_GMP_PCR1
GSM5643451
KF15_Ptprca_M18_BM_LSK_GMP_PCR2
GSM5643452
KF15_Ptprca_M19_BM_LSK_GMP_PCR1
GSM5643453
KF15_Ptprca_M19_BM_LSK_GMP_PCR2
GSM5643454
KF15_Ptprca_M20_BM_LSK_GMP_PCR1
GSM5643455
KF15_Ptprca_M20_BM_LSK_GMP_PCR2
GSM5643456
KF15_NSG_M21_BM_LSK_GMP_PCR1
GSM5643457
KF15_NSG_M21_BM_LSK_GMP_PCR2
GSM5643458
KF15_NSG_M22_BM_LSK_GMP_PCR1
GSM5643459
KF15_NSG_M22_BM_LSK_GMP_PCR2
GSM5643460
KF15_NSG_M23_BM_LSK_GMP_PCR1
GSM5643461
KF15_NSG_M23_BM_LSK_GMP_PCR2
GSM5643462
KF15_Ptprca_M1_SPL_LSK_PCR1
GSM5643463
KF15_Ptprca_M1_SPL_LSK_PCR2
GSM5643464
KF15_Ptprca_M2_SPL_LSK_PCR1
GSM5643465
KF15_Ptprca_M2_SPL_LSK_PCR2
GSM5643466
KF15_Ptprca_M3_SPL_LSK_PCR1
GSM5643467
KF15_Ptprca_M3_SPL_LSK_PCR2
GSM5643468
KF15_Ptprca_M5_SPL_GMP_PCR1
GSM5643469
KF15_Ptprca_M5_SPL_GMP_PCR2
GSM5643470
KF15_Ptprca_M6_SPL_GMP_PCR1
GSM5643471
KF15_Ptprca_M6_SPL_GMP_PCR2
GSM5643472
KF15_Ptprca_M7_SPL_GMP_PCR1
GSM5643473
KF15_Ptprca_M7_SPL_GMP_PCR2
GSM5643474
KF15_Ptprca_M8_SPL_GMP_PCR1
GSM5643475
KF15_Ptprca_M8_SPL_GMP_PCR2
GSM5643476
KF15_NSG_M9_SPL_LSK_PCR1
GSM5643477
KF15_NSG_M9_SPL_LSK_PCR2
GSM5643478
KF15_NSG_M10_SPL_LSK_PCR1
GSM5643479
KF15_NSG_M10_SPL_LSK_PCR2
GSM5643480
KF15_NSG_M11_SPL_LSK_PCR1
GSM5643481
KF15_NSG_M11_SPL_LSK_PCR2
GSM5643482
KF15_NSG_M12_SPL_LSK_PCR1
GSM5643483
KF15_NSG_M12_SPL_LSK_PCR2
GSM5643484
KF15_NSG_M13_SPL_GMP_PCR1
GSM5643485
KF15_NSG_M13_SPL_GMP_PCR2
GSM5643486
KF15_NSG_M14_SPL_GMP_PCR1
GSM5643487
KF15_NSG_M14_SPL_GMP_PCR2
GSM5643488
KF15_NSG_M15_SPL_GMP_PCR1
GSM5643489
KF15_NSG_M15_SPL_GMP_PCR2
GSM5643490
KF15_NSG_M16_SPL_GMP_PCR1
GSM5643491
KF15_NSG_M16_SPL_GMP_PCR2
GSM5643492
KF15_Ptprca_M17_SPL_LSK_GMP_PCR1
GSM5643493
KF15_Ptprca_M17_SPL_LSK_GMP_PCR2
GSM5643494
KF15_Ptprca_M18_SPL_LSK_GMP_PCR1
GSM5643495
KF15_Ptprca_M18_SPL_LSK_GMP_PCR2
GSM5643496
KF15_Ptprca_M19_SPL_LSK_GMP_PCR1
GSM5643497
KF15_Ptprca_M19_SPL_LSK_GMP_PCR2
GSM5643498
KF15_Ptprca_M20_SPL_LSK_GMP_PCR1
GSM5643499
KF15_Ptprca_M20_SPL_LSK_GMP_PCR2
GSM5643500
KF15_NSG_M21_SPL_LSK_GMP_PCR1
GSM5643501
KF15_NSG_M21_SPL_LSK_GMP_PCR2
GSM5643502
KF15_NSG_M22_SPL_LSK_GMP_PCR1
GSM5643503
KF15_NSG_M22_SPL_LSK_GMP_PCR2
GSM5643504
KF15_NSG_M23_SPL_LSK_GMP_PCR1
GSM5643505
KF15_NSG_M23_SPL_LSK_GMP_PCR2
GSM5643506
KF15_NSG_M24_SPL_LSK_GMP_PCR1
GSM5643507
KF15_NSG_M24_SPL_LSK_GMP_PCR2
GSM5643508
KF15_GMP_T0_GMP_T0_TP0_GMP_T0_PCR1
GSM5643509
KF15_GMP_T0_GMP_T0_TP0_GMP_T0_PCR2
GSM5643510
KF15_GMPLSK_T0_GMPLSK_T0_TP0_GMPLSK_T0_PCR1
GSM5643511
KF15_GMPLSK_T0_GMPLSK_T0_TP0_GMPLSK_T0_PCR2
GSM5643512
KF15_LSK_T0_LSK_T0_TP0_LSK_T0_PCR1
GSM5643513
KF15_LSK_T0_LSK_T0_TP0_LSK_T0_PCR2
GSM5643514
KF16_Ptprca_TP0-01_PCR1
GSM5643515
KF16_Ptprca_TP0-02_PCR1
GSM5643516
KF16_Ptprca_M01_PB_MRD_PCR1
GSM5643517
KF16_Ptprca_M02_PB_RELAPSE_PCR1
GSM5643518
KF16_Ptprca_M03_PB_RELAPSE_PCR1
GSM5643519
KF16_Ptprca_M04_PB_VEHICLE_PCR1
GSM5643520
KF16_Ptprca_M05_PB_VEHICLE_PCR1
GSM5643521
KF16_Ptprca_M07_PB_MRD_PCR1
GSM5643522
KF16_Ptprca_M08_PB_VEHICLE_PCR1
GSM5643523
KF16_Ptprca_M11_PB_VEHICLE_PCR1
GSM5643524
KF16_Ptprca_M14_PB_VEHICLE_PCR1
GSM5643525
KF16_Ptprca_M15_PB_VEHICLE_PCR1
GSM5643526
KF16_Ptprca_TP0-01_PCR2
GSM5643527
KF16_Ptprca_TP0-02_PCR2
GSM5643528
KF16_Ptprca_M01_PB_MRD_PCR2
GSM5643529
KF16_Ptprca_M02_PB_RELAPSE_PCR2
GSM5643530
KF16_Ptprca_M03_PB_RELAPSE_PCR2
GSM5643531
KF16_Ptprca_M04_PB_VEHICLE_PCR2
GSM5643532
KF16_Ptprca_M05_PB_VEHICLE_PCR2
GSM5643533
KF16_Ptprca_M07_PB_MRD_PCR2
GSM5643534
KF16_Ptprca_M08_PB_VEHICLE_PCR2
GSM5643535
KF16_Ptprca_M11_PB_VEHICLE_PCR2
GSM5643536
KF16_Ptprca_M14_PB_VEHICLE_PCR2
GSM5643537
KF16_Ptprca_M15_PB_VEHICLE_PCR2
GSM5643538
KF16_Ptprca_M04_BM_VEHICLE_PCR1
GSM5643539
KF16_Ptprca_M05_BM_VEHICLE_PCR1
GSM5643540
KF16_Ptprca_M09_BM_MRD_PCR1
GSM5643541
KF16_Ptprca_M10_BM_MRD_PCR1
GSM5643542
KF16_Ptprca_M11_BM_VEHICLE_PCR1
GSM5643543
KF16_Ptprca_M12_BM_RELAPSE_PCR1
GSM5643544
KF16_Ptprca_M13_BM_VEHICLE_PCR1
GSM5643545
KF16_Ptprca_M14_BM_VEHICLE_PCR1
GSM5643546
KF16_Ptprca_M15_BM_VEHICLE_PCR1
GSM5643547
KF16_Ptprca_M16_BM_VEHICLE_PCR1
GSM5643548
KF16_Ptprca_M18_BM_VEHICLE_PCR1
GSM5643549
KF16_Ptprca_M19_BM_VEHICLE_PCR1
GSM5643550
KF16_Ptprca_M04_BM_VEHICLE_PCR2
GSM5643551
KF16_Ptprca_M05_BM_VEHICLE_PCR2
GSM5643552
KF16_Ptprca_M09_BM_MRD_PCR2
GSM5643553
KF16_Ptprca_M10_BM_MRD_PCR2
GSM5643554
KF16_Ptprca_M11_BM_VEHICLE_PCR2
GSM5643555
KF16_Ptprca_M12_BM_RELAPSE_PCR2
GSM5643556
KF16_Ptprca_M13_BM_VEHICLE_PCR2
GSM5643557
KF16_Ptprca_M14_BM_VEHICLE_PCR2
GSM5643558
KF16_Ptprca_M15_BM_VEHICLE_PCR2
GSM5643559
KF16_Ptprca_M16_BM_VEHICLE_PCR2
GSM5643560
KF16_Ptprca_M18_BM_VEHICLE_PCR2
GSM5643561
KF16_Ptprca_M19_BM_VEHICLE_PCR2
GSM5643562
KF16_Ptprca_M04_SPL_VEHICLE_PCR1
GSM5643563
KF16_Ptprca_M05_SPL_VEHICLE_PCR1
GSM5643564
KF16_Ptprca_M08_SPL_VEHICLE_PCR1
GSM5643565
KF16_Ptprca_M11_SPL_VEHICLE_PCR1
GSM5643566
KF16_Ptprca_M13_SPL_VEHICLE_PCR1
GSM5643567
KF16_Ptprca_M15_SPL_VEHICLE_PCR1
GSM5643568
KF16_Ptprca_M16_SPL_VEHICLE_PCR1
GSM5643569
KF16_Ptprca_M19_SPL_VEHICLE_PCR1
GSM5643570
KF16_Ptprca_M08_BM_VEHICLE_PCR1
GSM5643571
KF16_Ptprca_M04_SPL_VEHICLE_PCR2
GSM5643572
KF16_Ptprca_M05_SPL_VEHICLE_PCR2
GSM5643573
KF16_Ptprca_M08_SPL_VEHICLE_PCR2
GSM5643574
KF16_Ptprca_M11_SPL_VEHICLE_PCR2
GSM5643575
KF16_Ptprca_M13_SPL_VEHICLE_PCR2
GSM5643576
KF16_Ptprca_M15_SPL_VEHICLE_PCR2
GSM5643577
KF16_Ptprca_M16_SPL_VEHICLE_PCR2
GSM5643578
KF16_Ptprca_M19_SPL_VEHICLE_PCR2
GSM5643579
KF16_Ptprca_M08_BM_VEHICLE_PCR2
GSM5643580
chemo baseline scRNAseq tech rep 1
GSM5643581
chemo baseline scRNAseq tech rep 2
GSM5643582
chemo disease endpoint scRNA-seq pool 1
GSM5643583
chemo disease endpoint scRNA-seq pool 2
GSM5643584
chemo disease endpoint scRNA-seq pool 1 hashtag library
GSM5643585
chemo disease endpoint scRNA-seq pool 2 hashtag library
GSM5643586
retransplant baseline scRNAseq mouse 6 bone marrow
GSM5643587
retransplant baseline scRNAseq mouse 6 spleen
GSM5643588
wild type C57BL/6 #1
GSM5643589
wild type C57BL/6 #2
GSM5643590
tertiary MLL-AF9 #1
GSM5643591
tertiary MLL-AF9 #2
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE161657
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (primary leukaemia barcode-seq)
GSE161658
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (primary leukaemia scRNAseq)
GSE161661
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (secondary leukaemia exome)
GSE161662
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (NSG vs. BL6 barcode-seq)
GSE161666
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (NSG vs. BL6 scRNAseq)
GSE161669
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (retransplant barcode-seq)
GSE161672
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (clonal competition barcode-seq)
GSE161673
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (clonal competition scRNAseq)
GSE186303
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution [cell of origin barcode-seq]
GSE186304
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution [chemo barcode-seq]
GSE186305
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution [chemo scRNAseq]
GSE186306
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution [retransplant scRNAseq]
GSE186307
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution [tertiary leukemia LC-WGS]
Relations
BioProject
PRJNA679055
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Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
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GSE161676_RAW.tar
3.6 Gb
(http)
(custom)
TAR (of BED, MTX, SEG, TSV, VCF)
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