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| Status |
Public on Mar 08, 2010 |
| Title |
Genome-wide analysis of miRNA-targeted cellular NMD substrates in HeLa cell |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
Analysis of miRNA-targeted cellular NMD substrates in HeLa cell. The hypothesis tested in the present study was that endogenous NMD substrates containing long 3' untranslated region may targeted for miRNA. Results provide important information expanding the roles of miRISC in the posttranscriptional regulation of gene expression: a new cross-talk between miRNA-mediated gene silencing and NMD.
ABSTRACT: Imperfect base-pairing between microRNA (miRNA) and the 3’-untranslated region (3’UTR) of target mRNA triggers translational repression of the target mRNA. Here, we provide evidence that human Argonaute 2 (Ago2) targets cap-binding protein (CBP)80/20- and exon junction complex (EJC)-bound mRNAs and inhibits nonsense-mediated mRNA decay (NMD), which is tightly restricted to CBP80/20-bound mRNAs. Furthermore, microarray analyses reveal that a subset of cellular transcripts, which are expected to be targeted for NMD, is stabilized by miRNA-mediated gene silencing. The regulation of NMD by miRNAs will shed light on a new post-transcriptional regulation mechanism of gene expression in mammalian cells
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| Overall design |
Total RNA obtained from HeLa cells with downregulation of Ago2 or Ago2/UPF1 by siRNA. The up- or down-regulated transcripts were compared to control siRNA treated HeLa cell RNA extract. Significant transcripts were confirmed by replication.
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| |
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| Contributor(s) |
Choe J, Cho H |
| Citation(s) |
20395958 |
| Submission date |
May 20, 2009 |
| Last update date |
Mar 20, 2017 |
| Contact name |
Junho Choe |
| E-mail(s) |
ultimagic@hotmail.com
|
| Organization name |
School of Life science and Biotechnology
|
| Department |
korea University
|
| Lab |
Molecular genomics
|
| Street address |
Sungbuggu Anam 5ga
|
| City |
Seoul |
| ZIP/Postal code |
136-701 |
| Country |
South Korea |
| |
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| Platforms (1) |
| GPL6883 |
Illumina HumanRef-8 v3.0 expression beadchip |
|
| Samples (6)
|
| GSM406196 |
Control siRNA treated Replication 1 |
| GSM406197 |
Ago2 siRNA treated Replication 1 |
| GSM406198 |
UPF1 and Ago2 siRNA treated Replication 1 |
| GSM406199 |
Control siRNA treated Replication 2 |
| GSM406200 |
Ago2 siRNA treated Replication 2 |
| GSM406201 |
UPF1 and Ago2 siRNA treated Replication 2 |
|
| Relations |
| BioProject |
PRJNA117193 |
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