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Series GSE162098 Query DataSets for GSE162098
Status Public on Feb 23, 2021
Title Investigation of Drosophila fruitless neurons that express Dpr/DIP cell adhesion molecules
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary Drosophila reproductive behaviors are directed by fruitless neurons. A reanalysis of genomic studies shows that genes encoding dpr and DIP Immunoglobulin superfamily (IgSF) members are expressed in fru P1 neurons. We find that each fru P1 and dpr/DIP (fru P1 ∩ dpr/DIP) overlapping expression pattern is similar in both sexes, but there are dimorphisms in neuronal morphology and cell number. Behavioral studies of fru P1 ∩ dpr/DIP perturbation genotypes indicates that the mushroom body functions together with the lateral protocerebral complex to direct courtship behavior. A single-cell RNA-seq analysis of fru P1 neurons shows that many DIPs have high expression in a small set of neurons, whereas the dprs are often expressed in a larger set of neurons at intermediate levels, with a myriad of dpr/DIP expression combinations. Functionally, we find that perturbations of sex hierarchy genes and of DIP-ε change the sex-specific morphologies of fru P1 ∩ DIP-α neurons.
 
Overall design scRNA-seq using 10x Genomics CHROMIUM Single Cell 3’ Solution V2 Chemistry of 48hr after puparium formation (APF) male Drosophila Central Nervous System (CNS) cells where fru P1-expressing cells were genetically labeled with GFP.
 
Contributor(s) Palmateer C, Arbeitman M
Citation(s) 33616528
Submission date Nov 24, 2020
Last update date Feb 26, 2021
Contact name Michelle N Arbeitman
E-mail(s) michelle.arbeitman@med.fsu.edu
Organization name Florida State University
Department Department of Biomedical Sciences
Lab Arbeitman Lab
Street address 1115 W. Call Street
City Tallahassee
State/province Florida
ZIP/Postal code 32306
Country USA
 
Platforms (1)
GPL25244 Illumina NovaSeq 6000 (Drosophila melanogaster)
Samples (1)
GSM4933139 48hrAPF_Male
Relations
BioProject PRJNA680563
SRA SRP293941

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Supplementary file Size Download File type/resource
GSE162098_RAW.tar 172.7 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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