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Series GSE162393 Query DataSets for GSE162393
Status Public on Mar 17, 2021
Title Elevated Extracellular cGMP Produced after Exposure to Enterotoxigenic Escherichia coli (ETEC) Heat-Stable Toxin (ST) Induces Epithelial IL-33 Release and Alters Intestinal Immunity
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary The purpose of our study was to examine the effect of enterotoxigenic E. coli (ETEC) heat-stable toxin (ST) on global T84 gene expression at selected time points following intoxication, with the goal of understanding the functional effects of ST on host epithelium. RNASeq analysis relvealed that ST alters inflammatory gene expression, including the IL-1 family member IL33, which is induced downstream of cGMP.
 
Overall design We studied the effects of ETEC ST on T84 gene expression. We treated T84 cells with ST and collected three replicates each after 3 hr, 6 hr, and 24 hr post-intoxication. Treatment groups (in triplicate) were compared to untreated T84 cells (in triplicate).
 
Contributor(s) Motyka NI, Stewart SR, Hollifield IE, Kyllo TR, Mansfield JA, Norton EB, Clements JD, Bitoun JP
Citation(s) 33431701
Submission date Dec 01, 2020
Last update date Jun 16, 2021
Contact name Jay Kolls
Organization name Tulane University
Department Medicine
Lab Center for Translational Research in Infection and Inflammation
Street address 1430 Tulane Ave
City New Orleans
State/province LA
ZIP/Postal code 70112
Country USA
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (12)
GSM4950950 Untx 1
GSM4950951 Untx 2
GSM4950952 Untx 3
Relations
BioProject PRJNA681781
SRA SRP295300

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162393_abundance.fpkm.txt.gz 482.9 Kb (ftp)(http) TXT
GSE162393_abundance.htseq.txt.gz 334.3 Kb (ftp)(http) TXT
GSE162393_abundance_24hr.fpkm.txt.gz 483.7 Kb (ftp)(http) TXT
GSE162393_abundance_24hr.htseq.txt.gz 335.7 Kb (ftp)(http) TXT
GSE162393_abundance_6hr.fpkm.txt.gz 482.4 Kb (ftp)(http) TXT
GSE162393_abundance_6hr.htseq.txt.gz 335.1 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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