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Series GSE163559 Query DataSets for GSE163559
Status Public on Jun 18, 2021
Title Role of Gpnmb in response to virally expressed mutant SNCA
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Effect of Gpnmb knockout on development of differential expression in AAV-aSyn model was studied.
The "samid" sample characteristic is a sample identifier internal to Genentech.
The ID of this project in Genentech's ExpressionPlot database is PRJ0036339
 
Overall design RNA from contralateral or ipsilateral whole striatum or midbrain of male mice 10 weeks after injection with AAV expressing either human aSyn-A53T or null virus.
 
Contributor(s) Brendza B, Friedman B
Citation(s) 34464706
Submission date Dec 20, 2020
Last update date Sep 17, 2021
Contact name Brad A Friedman
E-mail(s) friedmab@gene.com
Organization name Genentech, Inc.
Department Bioinformatics
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94133
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (66)
GSM4981655 WT contra MB Null SAM24372701
GSM4981656 WT ipsi MB Null SAM24372721
GSM4981657 WT contra MB aSyn SAM24372710
Relations
BioProject PRJNA686770
SRA SRP298610

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163559_RAW.tar 26.9 Mb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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