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| Status |
Public on Oct 01, 2021 |
| Title |
Genome-wide determinants of Tn5 insertion preference |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Other
|
| Summary |
We generated Tn5 segmentation data on naked genomic DNA to explore the intrinsic Tn5 insertion preference along the whole genome
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| |
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| Overall design |
E14 cell line, HSPC primary cell from mouse, and K562 cell line were researched here. To explore the intrinsic Tn5 insertion preference, we extracted naked genomic DNA from these three cell types and used Tn5 for segmentation followed by sequencing. Each cell type has 2 or 3 biological replicates.
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| |
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| Contributor(s) |
Lu T, Zhang H |
| Citation(s) |
34729473 |
| Submission date |
Jan 17, 2021 |
| Last update date |
Nov 10, 2021 |
| Contact name |
Kuangyu Yen |
| E-mail(s) |
kuangyuyen@ihcams.ac.cn
|
| Organization name |
Institute of Hematology and Blood Diseases Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College
|
| Department |
State Key Laboratory of Experimental Hematology
|
| Street address |
Nanjing Road
|
| City |
Tianjin |
| ZIP/Postal code |
300020 |
| Country |
China |
| |
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| Platforms (3) |
| GPL21626 |
NextSeq 550 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (8)
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| Relations |
| BioProject |
PRJNA692745 |
| SRA |
SRP302123 |
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