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Series GSE165151 Query DataSets for GSE165151
Status Public on Nov 15, 2021
Title The strategy of a novel way to enhance bacterial motility
Organism Escherichia coli
Experiment type Expression profiling by high throughput sequencing
Summary Bacterial motility shows a strong evolvable feature depending on the environment. Hyper-motile E. coli could be isolated by evolving non-motile E. coli due to the mutations that enhanced transcriptional expression of the master regulator of the flagellum biosynthesis, FlhDC. These hyper-motile isolates showed reduced growth fitness but with the molecular mechanisms unrevealed. Here we obtained a novel type of hyper-motile isolates by evolving a weakly-motile E. coli K12 strain on the soft agar plates. These isolates carried high accumulated FlhDC proteins and they shared one single point mutation of ClpXV78F. The V78F affected the ATP binding to ClpX via steric repulsive effect and the mutated ClpXP protease lost most of its ability to degraded FlhDC and some other of its known targets. The signal tag of FlhDC for ClpXP recognition was also characterized. Intriguingly, in the hyper-motile strains, the highly enhanced expression of the motility genes was accompanied by the reduced expression of stress resistance genes relating to the reduced fitness of these isolates. Hence, ClpX appeared to be a novel and hot locus during the evolution of bacterial motility and the molecular mechanism of the trade-off between motility and growth was proposed for the first time.
 
Overall design Determination of gene expression in the wild type strain CY598 and its derivates CY706 (spontaneous clpX-V78F mutant), CY708 (spontaneous clpX-V78F mutant), CY1102 (manipulated clpX-V78F mutant), CY1166 (the CY708 strain with a wild-type clpX), and CY1179 (manipulated ∆clpX mutant).
 
Contributor(s) You C, Li B
Citation(s) 34900963
Submission date Jan 19, 2021
Last update date Dec 15, 2021
Contact name Conghui You
E-mail(s) cyou@szu.edu.cn
Organization name Shenzhen University
Street address 1068 Xueyuan Rd., Nanshan District
City Shenzhen
State/province Guangdong
ZIP/Postal code 518037
Country China
 
Platforms (1)
GPL25368 Illumina NovaSeq 6000 (Escherichia coli)
Samples (21)
GSM5027101 CY598-1
GSM5027102 CY598-2
GSM5027103 CY598-3
Relations
BioProject PRJNA693394
SRA SRP302486

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE165151_CY1102.txt.gz 158.2 Kb (ftp)(http) TXT
GSE165151_CY1166.txt.gz 157.1 Kb (ftp)(http) TXT
GSE165151_CY1179.txt.gz 158.9 Kb (ftp)(http) TXT
GSE165151_CY598-round1.txt.gz 157.9 Kb (ftp)(http) TXT
GSE165151_CY598-round2.txt.gz 157.1 Kb (ftp)(http) TXT
GSE165151_CY706.txt.gz 157.5 Kb (ftp)(http) TXT
GSE165151_CY708.txt.gz 157.4 Kb (ftp)(http) TXT
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Processed data are available on Series record

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