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Series GSE165456 Query DataSets for GSE165456
Status Public on Jan 26, 2021
Title scRNAseq of MMTV-Neu primary site and lung cancer cells in early and late stage
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Cancer cells can disseminate from early-evolved primary lesions. It is thought that a state of early disseminated cancer cell (early DCC) dormancy would precede genetic maturation of DCCs and metastasis initiation. Here we reveal at single cell resolution a previously unrecognized role of mesenchymal- and pluripotency-like programs in coordinating early cancer cell spread and a long-lived dormancy program in early DCCs. We identify in early lesions and early DCCs, the transcription factor ZFP281 as an inducer of mesenchymal- and primed pluripotency-like programs, which is absent in advanced primary tumors and overt metastasis. ZFP281 not only controls the early spread of cancer cells but also locks early DCCs in a prolonged dormancy state by preventing the acquisition of an epithelial-like proliferative program. Thus, ZFP281-driven dormancy of early DCCs may be a rate-limiting step in metastatic progression functioning as a first barrier that DCCs must overcome to then undergo genetic maturation.
This data set aims for a general characterization of the MMTV-Neu mouse model (primary site and lung DCCs) in early and late stages of cancer progression.
 
Overall design Single cell RNA profile of early and late breast cancer cells of MMTV-neu mice in the primary site (early lesions, EL; primary tumors, PT) and lungs (early lung disseminated cancer cells, eL DCCs; late lung DCCs, LL DDCs)
Web link https://www.researchsquare.com/article/rs-145308/v1
 
Contributor(s) Kenigsberg E, Nobre AR
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Submission date Jan 25, 2021
Last update date May 05, 2021
Contact name Julio Aguirre-Ghiso
E-mail(s) julio.aguirre-ghiso@mssm.edu
Organization name Icahn School of Medicine at Mount Sinai
Street address 1468 Madison Avenue, A24-64e
City New York
State/province NY
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (4)
GSM5034095 Early Lung (eL) DCCs
GSM5034096 Late Lung (LL) DCCs
GSM5034097 Early lesion (EL) cells
Relations
BioProject PRJNA694640
SRA SRP303156

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Supplementary file Size Download File type/resource
GSE165456_RAW.tar 29.5 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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