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| Status |
Public on Jun 09, 2021 |
| Title |
Identification of competing endogenous RNA (ceRNA) and micro-RNA profiles and regulatory networks in 4-nonylphenol-induced impairment of sertoli cells I |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Purpose: To uncover the mechanism of 4-nonylphenol-induced impairment of sertoli cells, we used RNA sequencing technology to compare the lncRNA expression differences between the control groups and the 4-nonylphenol treated groups. Sertoli cells lncRNA, circRNA, mRNA profiles of the control groups and the 4-nonylphenol treated groups were generated by deep sequencing, in duplicate. The library quality was determined using a Bioanalyzer 2100 (Agilent). The Illumina hiseq X ten platform was used for lnc RNA sequencing. The quality of RNA-seq reads was examined using FastQC.
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| Overall design |
4-nonylphenol-treated and control sertoli cells lncRNA, circRNA, mRNA profiles of 24h were generated by deep sequencing, in duplicate.
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| Contributor(s) |
Liu W, Hu X |
| Citation(s) |
34084133 |
| Submission date |
Feb 28, 2021 |
| Last update date |
Jun 09, 2021 |
| Contact name |
wenjie liu |
| E-mail(s) |
wjliu@xmu.edu.cn
|
| Organization name |
xiamen university
|
| Street address |
xiangan strict xiamen university
|
| City |
xiamen |
| ZIP/Postal code |
361102 |
| Country |
China |
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| Platforms (1) |
| GPL24688 |
HiSeq X Ten (Rattus norvegicus) |
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| Samples (4)
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| This SubSeries is part of SuperSeries: |
| GSE167912 |
Identification of competing endogenous RNA (ceRNA) and micro-RNA profiles and regulatory networks in 4-nonylphenol-induced impairment of sertoli cells |
|
| Relations |
| BioProject |
PRJNA705483 |
| SRA |
SRP308578 |
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