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GEO accession:
Series GSE169458
Query DataSets for GSE169458
Status
Public on Sep 22, 2021
Title
Mobility of condensin DC is key to its function in repressing transcription
Organism
Caenorhabditis elegans
Experiment type
Expression profiling by high throughput sequencing
Other
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34918745
Submission date
Mar 23, 2021
Last update date
Dec 22, 2021
Contact name
Jun Kim
E-mail(s)
kimj50@nyu.edu
Phone
7183094777
Organization name
NYU
Department
Biology
Lab
Ercan
Street address
100 Washington Square East 1009 Silver Center
City
New York
State/province
NY
ZIP/Postal code
10003
Country
USA
Platforms (3)
GPL13657
Illumina HiSeq 2000 (Caenorhabditis elegans)
GPL18245
Illumina HiSeq 2500 (Caenorhabditis elegans)
GPL26672
Illumina NovaSeq 6000 (Caenorhabditis elegans)
Samples (63)
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More...
GSM5075626
SEA51SEA58_VC199_emb_rep1
GSM5075627
SEA70_VC199_emb_rep2
GSM5075628
SEA77_VC199_emb_rep3
GSM5075629
SEA86_VC199_emb_rep4
GSM5075630
MK11_VC199_Larvae_rep1
GSM5075631
MK19MK27_VC199_Larvae_rep2
GSM5075632
MK46_VC199_Larvae_rep3
GSM5075633
MK60_VC199_Larvae_rep4
GSM5075634
LS_ext534_emb_RNA_N2_HS_rep1
GSM5075635
LS_ext536_emb_RNA_N2_HS_rep2
GSM5075636
LS_ext549_emb_RNA_N2_HS_rep3
GSM5075637
MK14_emb_RNA_rep1
GSM5075638
MK14_emb_RNA_rep2
GSM5075639
MK14_emb_RNA_rep3
GSM5075640
KB01_emb_RNA_rep1
GSM5075641
KB01_emb_RNA_rep2
GSM5075642
KB01_emb_RNA_rep3
GSM5203556
dpy21 rep1
GSM5203557
dpy21 rep2
GSM5208686
DPY27_N2xv_L3_AKM61_input_AKM64
GSM5208687
DPY27_N2xv_L3_AKM62_input_AKM65
GSM5208688
DPY27_N2xv_L3_AKM186_input_AKM192
GSM5208689
DPY27_jmjxv_L3_AKM109_input_AKM112
GSM5208690
DPY27_jmjxv_L3_AKM110_input_AKM113
GSM5208691
DPY27_jmjxv_L3_AKM185_input_AKM191
GSM5208692
DPY27_set4xv_L3_AKM60_input_AKM63
GSM5208693
DPY27_set4xv_L3_AKM108_input_AKM111
GSM5208694
DPY27_set4xv_L3_AKM184_input_AKM190
GSM5208695
DPY27_set4xv_L3_AKM187_input_AKM193
GSM5208696
DPY27_sir2_emb_SE275_input_SE277
GSM5208697
DPY27_sir2_emb_SE242_input_SE244
GSM5208698
DPY26_KB01_emb_LAS17_input_LAS21
GSM5208699
DPY-26_KB01_emb_LAS30_input_LAS36
GSM5208700
DPY-26_KB01_emb_AKM05_AKM27
GSM5208701
DPY-26_MK14_emb_LAS16_input_LAS20
GSM5208702
DPY-26_MK14_emb_LAS29_LAS35
GSM5208703
DPY-26_MK14_emb_AKM03_input_AKM26
GSM5208704
DPY27-GFP_KB01_emb_LAS15_input_LAS21
GSM5208705
DPY27-GFP_KB01_emb_LAS26_input_LAS36
GSM5208706
DPY27-GFP_KB01_emb_AKM04_input_AKM27
GSM5208707
DPY27-GFP_MK14_emb_LAS25_input_LAS35
GSM5208708
DPY27-GFP_MK14_emb_LAS14_input_LAS20
GSM5208709
DPY27-GFP_MK14_emb_AKM02_input_AKM26
GSM5208710
input_AKM64
GSM5208711
input_AKM65
GSM5208712
input_AKM192
GSM5208713
input_AKM112
GSM5208714
input_AKM113
GSM5208715
input_AKM191
GSM5208716
input_AKM63
GSM5208717
input_AKM111
GSM5208718
input_AKM190
GSM5208719
input_AKM193
GSM5208720
input_SE277
GSM5208721
input_SE244
GSM5208722
input_LAS21
GSM5208723
input_LAS36
GSM5208724
input_AKM27
GSM5208725
input_LAS20
GSM5208726
input_LAS35
GSM5208727
input_AKM26
GSM5592862
jmjC rep1
GSM5592863
jmjC rep2
This SuperSeries is composed of the following SubSeries:
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More...
GSE166549
Mobility of condensin DC is key to its function in repressing transcription [RNA-seq I]
GSE166550
Mobility of condensin DC is key to its function in repressing transcription [RNA-seq II]
GSE169456
Mobility of condensin DC is key to its function in repressing transcription [Hi-C]
GSE169524
Mobility of condensin DC is key to its function in repressing transcription [ChIP-seq]
Relations
BioProject
PRJNA716649
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE169458_RAW.tar
2.8 Gb
(http)
(custom)
TAR (of BW, HIC, TXT)
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