NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE17109 Query DataSets for GSE17109
Status Public on Jan 01, 2010
Title MYC Transactome Mapped by Global Array-based Nuclear Run-on (ANRO)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary We describe and illustrate the use of a method to measure nascent nuclear gene transcription with an Array-based Nuclear Run-On (ANRO) assay using a commercial microarray platform.
ANRO measurements in an inducible c-Myc expressing human P493-6 B cell model reveals time-dependent waves of transcription, with a transactome early after c-Myc induction that does not persist at a late, steady-state phase, when genes that are regulated by c-Myc and E2F predominate.
 
Overall design Gene expression is compared at a global level across a 48 hour time course as measured for both nuclear run-on and total RNA using the Illumina microarray platform.
 
Contributor(s) Fan J, Cheadle C
Citation(s) 20300622
Submission date Jul 15, 2009
Last update date Mar 21, 2012
Contact name chris cheadle
E-mail(s) ccheadl1@jhmi.edu
Phone 4105505984
Organization name JHU
Department SOM
Lab JHBMC Genomics Core
Street address 5200 Eastern Ave
City baltimore
State/province MD
ZIP/Postal code 21224
Country USA
 
Platforms (1)
GPL6255 Illumina humanRef-8 v2.0 expression beadchip
Samples (100)
GSM427913 NRO_ 0h-1
GSM427914 NRO_ 0h-2
GSM427915 NRO_ 0h-3
Relations
BioProject PRJNA119793

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17109_normalized_data.txt.gz 9.1 Mb (ftp)(http) TXT
GSE17109_raw_data.txt.gz 8.0 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap