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GEO accession:
Series GSE173664
Query DataSets for GSE173664
Status
Public on May 07, 2021
Title
Transcriptional reprogramming by oxidative stress occurs within a predefined chromatin accessibility landscape
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33992677
Submission date
Apr 30, 2021
Last update date
Aug 06, 2021
Contact name
Matthew Slattery
E-mail(s)
mslatter@d.umn.edu
Organization name
University of Minnesota Medical School
Department
Biomedical Sciences
Lab
Slattery
Street address
1035 University Drive, SMed 255
City
Duluth
State/province
MN
ZIP/Postal code
55812
Country
USA
Platforms (1)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (40)
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More...
GSM5273341
MCF7 cells – control 0 hr – rep 1
GSM5273342
MCF7 cells – control 0 hr – rep 2
GSM5273343
MCF7 cells – EtOH 1 hr – rep 1
GSM5273344
MCF7 cells – EtOH 1 hr – rep 2
GSM5273345
MCF7 cells – MEN 1 hr – rep 1
GSM5273346
MCF7 cells – MEN 1 hr – rep 2
GSM5273347
MCF7 cells – TBOOH 1 hr – rep 1
GSM5273348
MCF7 cells – TBOOH 1 hr – rep 2
GSM5273349
MCF7 cells – EtOH 8 hrs – rep 1
GSM5273350
MCF7 cells – EtOH 8 hrs – rep 2
GSM5273351
MCF7 cells – MEN 8 hrs – rep 1
GSM5273352
MCF7 cells – MEN 8 hrs – rep 2
GSM5273353
MCF7 cells – TBOOH 8 hrs – rep 1
GSM5273354
MCF7 cells – TBOOH 8 hrs – rep 2
GSM5273355
MCF7 cells – EtOH 24 hrs – rep 1
GSM5273356
MCF7 cells – EtOH 24 hrs – rep 2
GSM5273357
MCF7 cells – MEN 24 hrs – rep 1
GSM5273358
MCF7 cells – MEN 24 hrs – rep 2
GSM5273359
MCF7 cells – TBOOH 24 hrs – rep 1
GSM5273360
MCF7 cells – TBOOH 24 hrs – rep 2
GSM5273361
ATAC-seq_MCF7 cells – control 0 hr – rep 1
GSM5273362
ATAC-seq_MCF7 cells – control 0 hr – rep 2
GSM5273363
ATAC-seq_MCF7 cells – EtOH 1 hr – rep 1
GSM5273364
ATAC-seq_MCF7 cells – EtOH 1 hr – rep 2
GSM5273365
ATAC-seq_MCF7 cells – MEN 1 hr – rep 1
GSM5273366
ATAC-seq_MCF7 cells – MEN 1 hr – rep 2
GSM5273367
ATAC-seq_MCF7 cells – TBOOH 1 hr – rep 1
GSM5273368
ATAC-seq_MCF7 cells – TBOOH 1 hr – rep 2
GSM5273369
ATAC-seq_MCF7 cells – EtOH 8 hrs – rep 1
GSM5273370
ATAC-seq_MCF7 cells – EtOH 8 hrs – rep 2
GSM5273371
ATAC-seq_MCF7 cells – MEN 8 hrs – rep 1
GSM5273372
ATAC-seq_MCF7 cells – MEN 8 hrs – rep 2
GSM5273373
ATAC-seq_MCF7 cells – TBOOH 8 hrs – rep 1
GSM5273374
ATAC-seq_MCF7 cells – TBOOH 8 hrs – rep 2
GSM5273375
ATAC-seq_MCF7 cells – EtOH 24 hrs – rep 1
GSM5273376
ATAC-seq_MCF7 cells – EtOH 24 hrs – rep 2
GSM5273377
ATAC-seq_MCF7 cells – MEN 24 hrs – rep 1
GSM5273378
ATAC-seq_MCF7 cells – MEN 24 hrs – rep 2
GSM5273379
ATAC-seq_MCF7 cells – TBOOH 24 hrs – rep 1
GSM5273380
ATAC-seq_MCF7 cells – TBOOH 24 hrs – rep 2
This SuperSeries is composed of the following SubSeries:
GSE173662
Transcriptional reprogramming by oxidative stress occurs within a predefined chromatin accessibility landscape [RNA-seq]
GSE173663
Transcriptional reprogramming by oxidative stress occurs within a predefined chromatin accessibility landscape [ATAC-seq]
Relations
BioProject
PRJNA726553
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE173664_RAW.tar
54.6 Mb
(http)
(custom)
TAR (of TXT)
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