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Series GSE175996 Query DataSets for GSE175996
Status Public on Jun 04, 2021
Title Endothelial cell infection and dysfunction, immune activation in severe COVID-19
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary SARS-CoV2 infects endothelial cells and induce the dysfunction of them.
 
Overall design I. We infected WT C57BL/6J or K18 hACE2 transegnic mice in both male and female mice with 2x10^5 pfu SARS-CoV2. Then those mice were eutanized 4 days post challenge and the lungs were removed and processed for total RNA preparation.
II. We infected female WT C57BL/6J or K18 hACE2 transgenic mice with 2x10^5 pfu SARS-CoV2. Then those mice were eutanized 4 days post challenge and the lungs were removed and processed for single cell suspensions.
 
Contributor(s) Qin X, Kolls J
Citation(s) 34335981
NIH grant(s)
Grant ID Grant title Affiliation Name
U54 CA260581 Tulane University COVID Antibody and Immunity Network (TUCAIN) TULANE UNIVERSITY JAMES E Robinson
Submission date Jun 02, 2021
Last update date Aug 01, 2023
Contact name Jay Kolls
Organization name Tulane University
Department Medicine
Lab Center for Translational Research in Infection and Inflammation
Street address 1430 Tulane Ave
City New Orleans
State/province LA
ZIP/Postal code 70112
Country USA
 
Platforms (2)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL21626 NextSeq 550 (Mus musculus)
Samples (8)
GSM5352466 Xuebin#4
GSM5352467 Xuebin#8
GSM5939831 WT_M1
Relations
BioProject PRJNA734526
SRA SRP322333

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE175996_CtrlCovid_WASarsCoV2_mF_agg_filtered_feature_bc_matrix.h5 15.1 Mb (ftp)(http) H5
GSE175996_CtrlCovid_mF_agg_filtered_feature_bc_matrix.h5 15.1 Mb (ftp)(http) H5
GSE175996_CtrlCovid_mhF_agg_filtered_feature_bc_matrix.h5 15.6 Mb (ftp)(http) H5
GSE175996_WT_M_vs_K18_M_d6_abundance.fpkm.txt.gz 513.3 Kb (ftp)(http) TXT
GSE175996_WT_M_vs_K18_M_d6_abundance.htseq.txt.gz 351.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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