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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 12, 2009 |
| Title |
mRNA profiling reveals divergent roles of PPARa and PPARß/d in regulating mouse liver gene expression (PPARa samples) |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
Little is known about the role of the transcription factor PPARß/d in liver. Here we set out to better elucidate the function of PPARß/d in liver by comparing the effect of PPARa and PPARß/d deletion using whole genome transcriptional profiling and analysis of plasma and liver metabolites. In fed state, the number of genes altered by PPARa and PPARß/d deletion was similar, whereas in fasted state the effect of PPARa deletion was much more pronounced, consistent with the pattern of gene expression of PPARa and PPARß/d. Minor overlap was found between PPARa- and PPARß/d-dependent gene regulation in liver. Pathways upregulated by PPARß/d deletion were connected to innate immunity. Pathways downregulated by PPARß/d deletion included lipoprotein metabolism and various pathways related to glucose utilization, which correlated with elevated plasma glucose and triglycerides and reduced plasma cholesterol in PPARß/d-/- mice. Downregulated genes that may underlie these metabolic alterations included Pklr, Fbp1, Apoa4, Vldlr, Lipg, and Pcsk9, which may represent novel PPARß/d target genes. In contrast to PPARa-/- mice, no changes in plasma FFA, plasma ß-hydroxybutyrate, liver triglycerides and liver glycogen were observed in PPARß/d-/- mice. Our data indicate a role for PPARß/d in hepatic glucose utilization and lipoprotein metabolism but not in the adaptive response to fasting.
Keywords: Analysis of target gene regulation by using microarrays
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| Overall design |
Pure-bred Sv129 PPARα -/- mice and corresponding wildtype mice were used. Male mice (n=4-5 per group) were either fed or fasted for 24 hours. At the end of the experiment, mice were anaesthetized with a mixture of isofluorane (1.5%), nitrous oxide (70%) and oxygen (30%). Blood was collected by orbital puncture, after which the mice were sacrificed by cervical dislocation. Livers were dissected, snap frozen in liquid nitrogen and kept at -80ºC until further analysis. For RNA analyses, tissue from the same part of the liver lobe was used.
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| Contributor(s) |
Sanderson L, Boekschoten M, Desvergne B, Müller M, Kersten S |
| Citation(s) |
19805517, 33074794 |
| Submission date |
Aug 28, 2009 |
| Last update date |
Oct 20, 2020 |
| Contact name |
Guido Hooiveld |
| E-mail(s) |
guido.hooiveld@wur.nl
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| Organization name |
Wageningen University
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| Department |
Div. Human Nutrition & Health
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| Lab |
Nutrition, Metabolism & Genomics Group
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| Street address |
HELIX, Stippeneng 4
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| City |
Wageningen |
| ZIP/Postal code |
NL-6708WE |
| Country |
Netherlands |
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| Platforms (1) |
| GPL7440 |
NuGO array (mouse) NuGO_Mm1a520177 |
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| Samples (18)
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| This SubSeries is part of SuperSeries: |
| GSE17865 |
Transcriptional profiling reveals divergent roles of PPARa and PPARß/d in regulation of gene expression in mouse liver |
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| Relations |
| BioProject |
PRJNA123549 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE17863_RAW.tar |
35.1 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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