NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE184615 Query DataSets for GSE184615
Status Public on Sep 24, 2021
Title Hippocampal transcriptome analysis following environmental enrichment in a mouse model of fetal alcohol spectrum disorder
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Maternal alcohol consumption during pregnancy results in a spectrum of lifelong behavioral and cognitive deficits collectively known as Fetal Alcohol Spectrum Disorders (FASD). FASD is a major health burden in most societies, there is no cure, and the molecular mechanism involved in its development is poorly understood. Human neurodevelopment is a continuum that extends over two decades after birth, with the potential to influence outcomes both prenatally and postnatally. Here, we experimentally investigate if positive postnatal environment enrichment ameliorates behavioral deficits caused by ethanol exposure. Furthermore, we assessed if this modulation is associated with alterations in hippocampal gene expression. To accomplish this, we used a binge model of ethanol exposure followed by environmental enrichment in C57BL/6 mice to generate four groups of animals: (1) control mice raised in standard conditions, (2) mice raised in enriched environments, (3) ethanol-exposed mice raised in standard conditions, and (4) ethanol-exposed mice raised in enriched environments. The environmental enrichment includes larger home cages with more individuals for social interaction, regular exposure to novel items, and access to running wheels. Ethanol exposure results in anxiety-like behavior (light-dark box) as well as learning and memory deficits (Barnes maze) that are at least partially ameliorated by enrichment. Environmental enrichment also improves performance for individuals not exposed to ethanol. Ethanol exposure induces changes in adult hippocampal gene expression (RNA-Seq). Some of the changes in adult hippocampal gene expression following ethanol exposure are reversed by environmental enrichment. The results offer a potential mechanism of behavioral deficits caused by ethanol exposure, including the potential for amelioration after an FASD diagnosis.
 
Overall design Hippocampal RNA profiles of adult mice that had been prenatally exposed to alcohol and/or postnatal environmental enrichment as well as non-exposed controls were generated by sequencing, using Illumina HiSeq.
 
Contributor(s) Alberry BL, Chokroborty Hoque A, Singh SM
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Sep 22, 2021
Last update date Sep 24, 2021
Contact name Shiva M Singh
E-mail(s) ssingh@uwo.ca
Organization name Western University
Department Biology
Lab Singh
Street address 1151 Richmond Street
City London
State/province ON
ZIP/Postal code N6A 5B7
Country Canada
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (12)
GSM5593735 Hippocampus_CC1
GSM5593736 Hippocampus_CC2
GSM5593737 Hippocampus_CC3
Relations
BioProject PRJNA765366
SRA SRP338253

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE184615_tpmdata.csv.gz 2.1 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap