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Series GSE185874 Query DataSets for GSE185874
Status Public on Oct 15, 2021
Title Engineering Extracellular Vesicles by Three-dimensional Dynamic Culture of Human Mesenchymal Stem Cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary In current study, hMSCs were grown as 3D aggregates under wave motion to promote EV secretion (3D EVs). mRNA sequencing reveals global transcriptome alterations (e.g., upregulated Wnt, TNF, and Hippo signaling and downregulated cellular senescence) for 3D aggregates.
 
Overall design MSC cell were cultured under either 2D, 3D or hypoxia conditions, and harvested for mRNA-seq.
 
Contributor(s) Sun L, Yuan X
Citation(s) 35716062
Submission date Oct 13, 2021
Last update date Apr 09, 2023
Contact name li sun
E-mail(s) lsun2@fsu.edu, davidgmeckes@gmail.com
Organization name Florida State University
Department College of medicine
Street address 1115 west call st.
City Tallahassee
State/province FL
ZIP/Postal code 32306
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (18)
GSM5625080 BMMSC-2D-1
GSM5625081 BMMSC-2D-2
GSM5625082 BMMSC-2D-3
Relations
BioProject PRJNA771080
SRA SRP341267

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185874_202010_MSC_2D_3D_mRNA_Seq_RawCounts.xlsx 2.7 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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