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| Status |
Public on Oct 22, 2021 |
| Title |
Characterization of nucleocapsid-RNA interactions in Rift Valley fever virus infected cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Crosslinking immunoprecipitation and sequencing was used to characterize nucleocapsid-RNA interactions in Rift Valley fever virus infection. This data set includes illumina HiSeq paired-end reads of Rift Valley fever virus infected HEK293 cells. The sequencing libraries were generated from nucleocapsid-bound RNAs.
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| Overall design |
Samples are prepared at 12-, 24-, and 36-hour post-infection. Each timepoint included two biological replicates of experimental treatment and one size-matched control.
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| Contributor(s) |
Hayashi M, Lanchy J, Lodmell JS |
| Citation(s) |
34960686 |
| Submission date |
Oct 18, 2021 |
| Last update date |
Jan 21, 2022 |
| Contact name |
J. Stephen Lodmell |
| E-mail(s) |
stephen.lodmell@umontana.edu
|
| Organization name |
University of Montana
|
| Department |
Division of Biological Sciences
|
| Street address |
32 Campus Drive
|
| City |
Missoula |
| State/province |
MT |
| ZIP/Postal code |
59812 |
| Country |
USA |
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| Platforms (1) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA772277 |
| SRA |
SRP341941 |
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